Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QPX65_RS10370 Genome accession   NZ_CP126698
Coordinates   2133166..2134170 (-) Length   334 a.a.
NCBI ID   WP_011080039.1    Uniprot ID   A0A3Q0L4Y8
Organism   Vibrio vulnificus strain VV2018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2128166..2139170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS10340 (QPX65_10340) tolQ 2128312..2128995 (-) 684 WP_011080044.1 protein TolQ -
  QPX65_RS10345 (QPX65_10345) ybgC 2128985..2129404 (-) 420 WP_011080043.1 tol-pal system-associated acyl-CoA thioesterase -
  QPX65_RS10350 (QPX65_10350) ybgE 2129549..2129851 (-) 303 WP_017421971.1 cyd operon protein YbgE -
  QPX65_RS10355 (QPX65_10355) cydX 2129844..2129951 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  QPX65_RS10360 (QPX65_10360) cydB 2129964..2131100 (-) 1137 WP_011080041.1 cytochrome d ubiquinol oxidase subunit II -
  QPX65_RS10365 (QPX65_10365) cydA 2131117..2132703 (-) 1587 WP_188011916.1 cytochrome ubiquinol oxidase subunit I -
  QPX65_RS10370 (QPX65_10370) ruvB 2133166..2134170 (-) 1005 WP_011080039.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QPX65_RS10375 (QPX65_10375) ruvA 2134192..2134806 (-) 615 WP_011080038.1 Holliday junction branch migration protein RuvA -
  QPX65_RS10380 (QPX65_10380) - 2134877..2136337 (-) 1461 WP_285453899.1 methyl-accepting chemotaxis protein -
  QPX65_RS10385 (QPX65_10385) ruvC 2136452..2136973 (-) 522 WP_011080036.1 crossover junction endodeoxyribonuclease RuvC -
  QPX65_RS10390 (QPX65_10390) aspS 2137040..2138818 (-) 1779 WP_194593054.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37126.56 Da        Isoelectric Point: 4.8134

>NTDB_id=768428 QPX65_RS10370 WP_011080039.1 2133166..2134170(-) (ruvB) [Vibrio vulnificus strain VV2018]
MIEADRLIAPDNPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKG
NGHICADTADKALNMLDVDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=768428 QPX65_RS10370 WP_011080039.1 2133166..2134170(-) (ruvB) [Vibrio vulnificus strain VV2018]
ATGATTGAAGCAGATCGCTTAATTGCTCCGGACAATCCCGCTTTTCGTGATGAAGATGTGATTGACCGCGCGATACGACC
AAAGAAACTCGCCGATTACCAAGGCCAAGATCACGTACGTGATCAAATGGAAATTTTTATTAAAGCCGCGCAATTGCGTA
ACGAAGCGCTCGACCATTTGTTGATTTTTGGCCCTCCCGGTTTGGGTAAAACCACCTTAGCGAACATTGTTGCAAACGAG
ATGGGCGTAAATATTCGTACCACGTCAGGACCGGTGTTAGAAAAAGCGGGAGATTTAGCGGCCTTGCTGACCAATCTTGA
AGAAAACGACGTGCTCTTTATTGATGAGATACACCGACTCAGCCCGATGGTGGAAGAAGTGCTGTATCCAGCCATGGAAG
ATTACCAATTGGATATTATGATTGGTGAAGGCCCTGCTGCACGTTCAATCAAAATCGATTTGCCGCCCTTTACGCTAATT
GGTGCAACCACTCGTGCTGGCTCACTGACTTCCCCTTTGCGTGATCGTTTTGGTATTACCCAGCGTTTGGAGTATTACAA
AATTCCTGATCTGCAGAATATCGTGCAACGCAGTGCTGACTGCTTGGGGCTTTCCATGGAAGCGGAAGGGGCATTAGAGG
TGGCGCGTCGTGCGCGTGGTACACCACGTATTGCCAATCGCTTGTTGCGCCGCGTACGCGATTTTGCTGAAGTAAAAGGC
AATGGTCACATCTGTGCAGACACCGCAGACAAAGCGCTCAACATGCTCGATGTGGACTCGAAAGGTTTTGATTACATGGA
CCGCAAGTTGCTGTTGGCCATCATGGAGAAATTTGGTGGTGGTCCGGTTGGCTTGGATAACATGGCAGCCGCGATCGGTG
AAGAGAAAGACACGATTGAAGATGTGTTAGAGCCATATTTGATTCAGCAAGGTTATTTACAACGCACGCCTCGAGGGCGA
ATCGCAACCGATCGGGCGTATCTTCATTTCGGAATTGAAAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L4Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.79

98.503

0.599
  ruvB Streptococcus pneumoniae TIGR4

59.752

96.707

0.578
  ruvB Streptococcus pneumoniae R6

59.752

96.707

0.578
  ruvB Streptococcus pneumoniae D39

59.752

96.707

0.578
  ruvB Synechocystis sp. PCC 6803

55.016

92.515

0.509
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494