Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QPX68_RS12735 Genome accession   NZ_CP126696
Coordinates   2624259..2625263 (-) Length   334 a.a.
NCBI ID   WP_003152685.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2619259..2630263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS12705 - 2620287..2620943 (-) 657 WP_032873839.1 DUF421 domain-containing protein -
  QPX68_RS12710 - 2621110..2621496 (+) 387 WP_003152697.1 TIGR04086 family membrane protein -
  QPX68_RS12715 yajC 2621548..2621808 (-) 261 WP_007408187.1 preprotein translocase subunit YajC -
  QPX68_RS12720 tgt 2621839..2622984 (-) 1146 WP_014305500.1 tRNA guanosine(34) transglycosylase Tgt -
  QPX68_RS12725 queA 2623012..2624040 (-) 1029 WP_003152692.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QPX68_RS12730 - 2624066..2624266 (-) 201 WP_032873837.1 DUF2905 domain-containing protein -
  QPX68_RS12735 ruvB 2624259..2625263 (-) 1005 WP_003152685.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QPX68_RS12740 ruvA 2625274..2625879 (-) 606 WP_003152683.1 Holliday junction branch migration protein RuvA Machinery gene
  QPX68_RS12745 - 2626014..2626523 (-) 510 WP_007408184.1 intercompartmental signaling factor BofC -
  QPX68_RS12750 - 2626907..2627500 (-) 594 WP_014721606.1 YhcN/YlaJ family sporulation lipoprotein -
  QPX68_RS12755 safA 2627648..2628838 (-) 1191 WP_032873835.1 SafA/ExsA family spore coat assembly protein -
  QPX68_RS12760 nadA 2628966..2630069 (-) 1104 WP_032873833.1 quinolinate synthase NadA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37225.52 Da        Isoelectric Point: 4.7767

>NTDB_id=768338 QPX68_RS12735 WP_003152685.1 2624259..2625263(-) (ruvB) [Bacillus amyloliquefaciens strain GZY63]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=768338 QPX68_RS12735 WP_003152685.1 2624259..2625263(-) (ruvB) [Bacillus amyloliquefaciens strain GZY63]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTTCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCTACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAGAAGCTCCGGCTCTGGAAATCGCCAGACGGT
CAAGGGGAACACCGCGGGTTGCAAACCGGCTGCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGATGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTCGATCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTCCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

91.916

100

0.919
  ruvB Streptococcus pneumoniae TIGR4

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae R6

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae D39

60.736

97.605

0.593
  ruvB Synechocystis sp. PCC 6803

58.359

98.503

0.575
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518