Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | O9T43_RS03270 | Genome accession | NZ_CP115041 |
| Coordinates | 670887..671366 (+) | Length | 159 a.a. |
| NCBI ID | WP_039194679.1 | Uniprot ID | A0A467HC69 |
| Organism | Listeria monocytogenes strain MKELm2_2022 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 662726..724267 | 670887..671366 | within | 0 |
Gene organization within MGE regions
Location: 662726..724267
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O9T43_RS03190 (O9T43_03190) | - | 662726..663877 (-) | 1152 | WP_014930665.1 | tyrosine-type recombinase/integrase | - |
| O9T43_RS03195 (O9T43_03195) | - | 663899..664612 (-) | 714 | WP_039187930.1 | lipoprotein | - |
| O9T43_RS03200 (O9T43_03200) | - | 664667..665017 (-) | 351 | WP_223196558.1 | ImmA/IrrE family metallo-endopeptidase | - |
| O9T43_RS03205 (O9T43_03205) | - | 665168..665518 (-) | 351 | WP_039187933.1 | helix-turn-helix domain-containing protein | - |
| O9T43_RS03210 (O9T43_03210) | - | 665672..665869 (+) | 198 | WP_031641921.1 | helix-turn-helix transcriptional regulator | - |
| O9T43_RS03215 (O9T43_03215) | - | 665892..666218 (+) | 327 | WP_039187936.1 | DUF771 domain-containing protein | - |
| O9T43_RS03220 (O9T43_03220) | - | 666391..667350 (+) | 960 | WP_068998183.1 | conserved phage C-terminal domain-containing protein | - |
| O9T43_RS03225 (O9T43_03225) | - | 667431..667787 (+) | 357 | WP_039188040.1 | phage terminase small subunit-related protein | - |
| O9T43_RS03230 (O9T43_03230) | - | 667784..668200 (+) | 417 | WP_039188042.1 | hypothetical protein | - |
| O9T43_RS03235 (O9T43_03235) | - | 668197..668373 (+) | 177 | WP_023552249.1 | hypothetical protein | - |
| O9T43_RS03240 (O9T43_03240) | - | 668387..668911 (+) | 525 | WP_039188044.1 | hypothetical protein | - |
| O9T43_RS03245 (O9T43_03245) | - | 668920..669384 (+) | 465 | WP_039188046.1 | class I SAM-dependent methyltransferase | - |
| O9T43_RS03250 (O9T43_03250) | - | 669381..669941 (+) | 561 | WP_039194685.1 | DUF1642 domain-containing protein | - |
| O9T43_RS03255 (O9T43_03255) | - | 670000..670401 (+) | 402 | WP_014601510.1 | hypothetical protein | - |
| O9T43_RS03260 (O9T43_03260) | - | 670398..670607 (+) | 210 | WP_039194683.1 | DUF7167 family protein | - |
| O9T43_RS03265 (O9T43_03265) | - | 670711..670890 (+) | 180 | WP_039194681.1 | hypothetical protein | - |
| O9T43_RS03270 (O9T43_03270) | ssbA | 670887..671366 (+) | 480 | WP_039194679.1 | single-stranded DNA-binding protein | Machinery gene |
| O9T43_RS03275 (O9T43_03275) | - | 671387..671626 (+) | 240 | WP_039187812.1 | hypothetical protein | - |
| O9T43_RS03280 (O9T43_03280) | - | 671632..671802 (+) | 171 | WP_223196559.1 | hypothetical protein | - |
| O9T43_RS03285 (O9T43_03285) | - | 671870..672391 (+) | 522 | WP_223196560.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| O9T43_RS03290 (O9T43_03290) | - | 672388..672930 (+) | 543 | WP_023552281.1 | tyrosine-type recombinase/integrase | - |
| O9T43_RS03295 (O9T43_03295) | - | 672946..673284 (+) | 339 | WP_014930678.1 | hypothetical protein | - |
| O9T43_RS03300 (O9T43_03300) | - | 673549..673875 (+) | 327 | WP_039187805.1 | hypothetical protein | - |
| O9T43_RS14970 | - | 673872..674234 (+) | 363 | WP_052198696.1 | HNH endonuclease signature motif containing protein | - |
| O9T43_RS03305 (O9T43_03305) | - | 674329..674856 (+) | 528 | WP_031668911.1 | phage terminase small subunit P27 family | - |
| O9T43_RS03310 (O9T43_03310) | - | 674849..676576 (+) | 1728 | WP_031668912.1 | terminase large subunit | - |
| O9T43_RS03315 (O9T43_03315) | - | 676583..676783 (+) | 201 | WP_023552290.1 | DUF1056 family protein | - |
| O9T43_RS03320 (O9T43_03320) | - | 676786..678021 (+) | 1236 | WP_012951323.1 | phage portal protein | - |
| O9T43_RS03325 (O9T43_03325) | - | 678018..678584 (+) | 567 | WP_012951324.1 | HK97 family phage prohead protease | - |
| O9T43_RS03330 (O9T43_03330) | - | 678648..679817 (+) | 1170 | WP_012951325.1 | phage major capsid protein | - |
| O9T43_RS03335 (O9T43_03335) | - | 679866..680204 (+) | 339 | WP_012951326.1 | head-tail connector protein | - |
| O9T43_RS03340 (O9T43_03340) | - | 680174..680494 (+) | 321 | WP_012951327.1 | phage head closure protein | - |
| O9T43_RS03345 (O9T43_03345) | - | 680488..680853 (+) | 366 | WP_031668913.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| O9T43_RS03350 (O9T43_03350) | - | 680856..681254 (+) | 399 | WP_012951329.1 | hypothetical protein | - |
| O9T43_RS03355 (O9T43_03355) | - | 681275..681850 (+) | 576 | WP_012951330.1 | major tail protein | - |
| O9T43_RS03360 (O9T43_03360) | gpG | 681940..682287 (+) | 348 | WP_012951331.1 | phage tail assembly chaperone G | - |
| O9T43_RS03365 (O9T43_03365) | - | 682580..686683 (+) | 4104 | WP_226314767.1 | phage tail tape measure protein | - |
| O9T43_RS03370 (O9T43_03370) | - | 686676..688919 (+) | 2244 | WP_014930683.1 | distal tail protein Dit | - |
| O9T43_RS03375 (O9T43_03375) | - | 688925..691216 (+) | 2292 | WP_031668916.1 | phage tail spike protein | - |
| O9T43_RS03380 (O9T43_03380) | - | 691209..692270 (+) | 1062 | WP_039194677.1 | hypothetical protein | - |
| O9T43_RS03385 (O9T43_03385) | - | 692309..692674 (+) | 366 | WP_003722523.1 | Gp23 family protein | - |
| O9T43_RS03390 (O9T43_03390) | - | 692687..692968 (+) | 282 | WP_003722522.1 | holin | - |
| O9T43_RS03395 (O9T43_03395) | - | 692968..693813 (+) | 846 | WP_039194676.1 | DUF5776 domain-containing protein | - |
| O9T43_RS03400 (O9T43_03400) | acrIIA1 | 693887..694336 (-) | 450 | WP_031668927.1 | anti-CRISPR protein AcrIIA1 | - |
| O9T43_RS03405 (O9T43_03405) | acrIIA2 | 694341..694712 (-) | 372 | WP_031668925.1 | anti-CRISPR protein AcrIIA2 | - |
| O9T43_RS03410 (O9T43_03410) | acrIIA3 | 694746..695102 (-) | 357 | WP_223196561.1 | anti-CRISPR protein AcrIIA3 | - |
| O9T43_RS14960 | - | 696837..697751 (+) | 915 | Protein_668 | trypsin-like serine peptidase | - |
| O9T43_RS03430 (O9T43_03430) | - | 697751..698110 (+) | 360 | WP_003732618.1 | lipoprotein | - |
| O9T43_RS14975 | - | 698220..698454 (+) | 235 | Protein_670 | hypothetical protein | - |
| O9T43_RS03435 (O9T43_03435) | - | 698642..699175 (+) | 534 | WP_009924470.1 | DUF3267 domain-containing protein | - |
| O9T43_RS03440 (O9T43_03440) | - | 699239..700156 (+) | 918 | WP_003722839.1 | aldo/keto reductase | - |
| O9T43_RS03445 (O9T43_03445) | - | 700422..702302 (+) | 1881 | WP_020246485.1 | heavy metal translocating P-type ATPase | - |
| O9T43_RS03450 (O9T43_03450) | - | 702398..703126 (+) | 729 | WP_009924467.1 | hypothetical protein | - |
| O9T43_RS03455 (O9T43_03455) | - | 703269..703919 (+) | 651 | WP_003732614.1 | transaldolase | - |
| O9T43_RS03460 (O9T43_03460) | ltaP | 703962..705782 (-) | 1821 | WP_077916961.1 | lipoteichoic acid primase LtaP | - |
| O9T43_RS03465 (O9T43_03465) | - | 706017..707408 (+) | 1392 | WP_003732612.1 | amino acid permease | - |
| O9T43_RS03470 (O9T43_03470) | - | 707498..708337 (+) | 840 | WP_009925348.1 | VOC family protein | - |
| O9T43_RS03475 (O9T43_03475) | - | 708420..708704 (-) | 285 | WP_003721764.1 | hypothetical protein | - |
| O9T43_RS03480 (O9T43_03480) | - | 708802..709752 (+) | 951 | WP_003721765.1 | magnesium transporter CorA family protein | - |
| O9T43_RS03485 (O9T43_03485) | - | 709776..710417 (+) | 642 | WP_003721766.1 | GntR family transcriptional regulator | - |
| O9T43_RS03490 (O9T43_03490) | - | 710460..713150 (+) | 2691 | WP_061724636.1 | YhgE/Pip domain-containing protein | - |
| O9T43_RS03495 (O9T43_03495) | - | 713196..713843 (+) | 648 | WP_003721768.1 | GntR family transcriptional regulator | - |
| O9T43_RS03500 (O9T43_03500) | - | 713852..714388 (-) | 537 | WP_009925176.1 | GNAT family N-acetyltransferase | - |
| O9T43_RS03505 (O9T43_03505) | - | 714375..715295 (-) | 921 | WP_003733993.1 | DUF975 family protein | - |
| O9T43_RS03510 (O9T43_03510) | - | 715486..715695 (+) | 210 | WP_003721771.1 | Lmo0654 family protein | - |
| O9T43_RS03515 (O9T43_03515) | - | 715763..716470 (+) | 708 | WP_003729376.1 | metallophosphoesterase family protein | - |
| O9T43_RS03520 (O9T43_03520) | - | 716514..717077 (-) | 564 | WP_003721773.1 | DUF420 domain-containing protein | - |
| O9T43_RS03525 (O9T43_03525) | - | 717197..717613 (+) | 417 | WP_003721774.1 | hypothetical protein | - |
| O9T43_RS03530 (O9T43_03530) | - | 717665..718300 (+) | 636 | WP_009925179.1 | endonuclease III domain-containing protein | - |
| O9T43_RS03535 (O9T43_03535) | - | 718290..719186 (-) | 897 | WP_003721776.1 | Rgg/GadR/MutR family transcriptional regulator | - |
| O9T43_RS03540 (O9T43_03540) | - | 719417..719701 (+) | 285 | WP_009931745.1 | helix-turn-helix domain-containing protein | - |
| O9T43_RS03545 (O9T43_03545) | - | 719756..720064 (-) | 309 | WP_010989541.1 | carboxymuconolactone decarboxylase family protein | - |
| O9T43_RS03550 (O9T43_03550) | pdxK | 720127..720942 (-) | 816 | WP_003721779.1 | pyridoxine/pyridoxal/pyridoxamine kinase | - |
| O9T43_RS03555 (O9T43_03555) | - | 720968..721834 (-) | 867 | WP_003721781.1 | Cof-type HAD-IIB family hydrolase | - |
| O9T43_RS03560 (O9T43_03560) | - | 722008..722571 (+) | 564 | WP_003721782.1 | maltose acetyltransferase domain-containing protein | - |
| O9T43_RS03565 (O9T43_03565) | - | 722568..722831 (+) | 264 | WP_003721783.1 | DUF5327 family protein | - |
| O9T43_RS03570 (O9T43_03570) | - | 722841..723218 (+) | 378 | WP_009924834.1 | DUF423 domain-containing protein | - |
| O9T43_RS03575 (O9T43_03575) | - | 723332..724267 (+) | 936 | WP_003721785.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17470.42 Da Isoelectric Point: 5.2753
>NTDB_id=768035 O9T43_RS03270 WP_039194679.1 670887..671366(+) (ssbA) [Listeria monocytogenes strain MKELm2_2022]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRAFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDGDGKRVFVTEVVAESVQFLEPKNNPGRAATNDYQNKANYSNNIQTSSYAADASQKGGAFVNDSKPIDIPDDDLSF
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRAFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDGDGKRVFVTEVVAESVQFLEPKNNPGRAATNDYQNKANYSNNIQTSSYAADASQKGGAFVNDSKPIDIPDDDLSF
Nucleotide
Download Length: 480 bp
>NTDB_id=768035 O9T43_RS03270 WP_039194679.1 670887..671366(+) (ssbA) [Listeria monocytogenes strain MKELm2_2022]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGACCCTGAATTACGTTACACTCCAGCAGGCGTAGCAGTCGC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATAAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCAGGCGTTGATGGACGCGTACAGACTCGT
AATTATGAGGACGGCGACGGTAAACGTGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACCCAGGAAGAGCTGCAACAAATGATTATCAAAACAAAGCTAATTATTCAAACAACATCCAAACAAGCTCATATGCAG
CGGATGCGAGTCAGAAAGGCGGTGCATTTGTTAATGATAGCAAGCCAATCGATATTCCAGATGATGATTTATCGTTTTAA
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGACCCTGAATTACGTTACACTCCAGCAGGCGTAGCAGTCGC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATAAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCAGGCGTTGATGGACGCGTACAGACTCGT
AATTATGAGGACGGCGACGGTAAACGTGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACCCAGGAAGAGCTGCAACAAATGATTATCAAAACAAAGCTAATTATTCAAACAACATCCAAACAAGCTCATATGCAG
CGGATGCGAGTCAGAAAGGCGGTGCATTTGTTAATGATAGCAAGCCAATCGATATTCCAGATGATGATTTATCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.921 |
100 |
0.704 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.757 |
100 |
0.585 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
66.667 |
0.415 |
| ssb | Neisseria meningitidis MC58 |
33.333 |
100 |
0.365 |