Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZ430_RS17425 Genome accession   NZ_CP115039
Coordinates   3707969..3708463 (-) Length   164 a.a.
NCBI ID   WP_230356052.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain LP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3702969..3713463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ430_RS17400 (OZ430_17410) - 3703102..3704448 (-) 1347 WP_312915192.1 MotA/TolQ/ExbB proton channel family protein -
  OZ430_RS17405 (OZ430_17415) - 3704445..3705230 (-) 786 WP_312915191.1 DUF3450 domain-containing protein -
  OZ430_RS17410 (OZ430_17420) - 3705415..3706077 (+) 663 WP_230356047.1 OmpW family outer membrane protein -
  OZ430_RS17415 (OZ430_17425) - 3706152..3707081 (-) 930 WP_230356050.1 NAD-dependent epimerase/dehydratase family protein -
  OZ430_RS17420 (OZ430_17430) - 3707074..3707958 (-) 885 WP_090519488.1 sugar nucleotide-binding protein -
  OZ430_RS17425 (OZ430_17435) ssb 3707969..3708463 (-) 495 WP_230356052.1 single-stranded DNA-binding protein Machinery gene
  OZ430_RS17430 (OZ430_17440) - 3708621..3709988 (-) 1368 WP_230356053.1 MFS transporter -
  OZ430_RS17435 (OZ430_17445) uvrA 3710120..3712963 (+) 2844 WP_041014995.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18415.49 Da        Isoelectric Point: 5.9492

>NTDB_id=768015 OZ430_RS17425 WP_230356052.1 3707969..3708463(-) (ssb) [Stutzerimonas kunmingensis strain LP1]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQARPQQREPQQTPRPQAQPQQPAARQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=768015 OZ430_RS17425 WP_230356052.1 3707969..3708463(-) (ssb) [Stutzerimonas kunmingensis strain LP1]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGGAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGATAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGTACCGAGT
GGCATCGCGTGGTGTTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAATGCTACATCGAG
GGACGCCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAAATAGTCGTCGACATGAACGGCAC
CATGCAGCTGCTCGGTGGCCGTGGCGGCAGTTCCGACGATGCGCCGCGTCAGGCTCGCCCGCAGCAGCGTGAGCCGCAGC
AGACGCCGCGCCCGCAGGCCCAGCCGCAGCAGCCCGCTGCGCGGCAGCAGCCGGCACCGGACTACGACAGCTTCGACGAC
GACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.386

100

0.616
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.512
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.5
  ssb Neisseria meningitidis MC58

46.023

100

0.494