Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICA20_RS22805 Genome accession   NZ_CP115032
Coordinates   4692424..4692948 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter sp. C5_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4687424..4697948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICA20_RS22785 (ICA20_022785) soxR 4689070..4689528 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  ICA20_RS22790 (ICA20_022790) soxS 4689615..4689938 (+) 324 WP_005132611.1 superoxide response transcriptional regulator SoxS -
  ICA20_RS22795 (ICA20_022795) - 4689941..4691527 (-) 1587 WP_038636279.1 EAL domain-containing protein -
  ICA20_RS22800 (ICA20_022800) - 4692077..4692358 (+) 282 WP_038636276.1 YjcB family protein -
  ICA20_RS22805 (ICA20_022805) ssb 4692424..4692948 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ICA20_RS22810 (ICA20_022810) uvrA 4693200..4696022 (+) 2823 WP_038636273.1 excinuclease ABC subunit UvrA -
  ICA20_RS22815 (ICA20_022815) - 4696108..4696464 (-) 357 WP_038636271.1 MmcQ/YjbR family DNA-binding protein -
  ICA20_RS22820 (ICA20_022820) aphA 4696591..4697304 (-) 714 WP_038636269.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=767964 ICA20_RS22805 WP_003826621.1 4692424..4692948(-) (ssb) [Citrobacter sp. C5_2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=767964 ICA20_RS22805 WP_003826621.1 4692424..4692948(-) (ssb) [Citrobacter sp. C5_2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTACGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGTGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5