Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QPL68_RS01490 Genome accession   NZ_CP126629
Coordinates   281280..282284 (+) Length   334 a.a.
NCBI ID   WP_259378652.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 35-42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 276280..287284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL68_RS01455 (QPL68_01455) mreD 276953..277483 (+) 531 WP_063651415.1 rod shape-determining protein MreD -
  QPL68_RS01460 (QPL68_01460) rplU 277719..278027 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QPL68_RS01465 (QPL68_01465) - 278033..278353 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QPL68_RS01470 (QPL68_01470) rpmA 278365..278649 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QPL68_RS01475 (QPL68_01475) obgE 278872..280164 (+) 1293 WP_000496098.1 GTPase ObgE -
  QPL68_RS01480 (QPL68_01480) - 280177..280632 (+) 456 WP_000368902.1 ACT domain-containing protein -
  QPL68_RS01485 (QPL68_01485) ruvA 280646..281248 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  QPL68_RS01490 (QPL68_01490) ruvB 281280..282284 (+) 1005 WP_259378652.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QPL68_RS01495 (QPL68_01495) queA 282286..283311 (+) 1026 WP_063651410.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QPL68_RS01500 (QPL68_01500) tgt 283334..284473 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QPL68_RS01505 (QPL68_01505) yajC 284492..284752 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37776.04 Da        Isoelectric Point: 4.9994

>NTDB_id=767880 QPL68_RS01490 WP_259378652.1 281280..282284(+) (ruvB) [Staphylococcus aureus strain 35-42]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTDPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=767880 QPL68_RS01490 WP_259378652.1 281280..282284(+) (ruvB) [Staphylococcus aureus strain 35-42]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCCGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGATCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTCTTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAACCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515