Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0312_RS21455 Genome accession   NZ_CP126614
Coordinates   4446258..4446794 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Ec1115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4441258..4451794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0312_RS21435 (F0312_021405) soxR 4442986..4443450 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  F0312_RS21440 (F0312_021410) soxS 4443536..4443859 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  F0312_RS21445 (F0312_021415) pdeC 4443862..4445448 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  F0312_RS21450 (F0312_021420) yjcB 4445878..4446159 (+) 282 WP_001295689.1 YjcB family protein -
  F0312_RS21455 (F0312_021425) ssb 4446258..4446794 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  F0312_RS21460 (F0312_021430) uvrA 4447048..4449870 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  F0312_RS21465 (F0312_021435) yjbR 4449905..4450261 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  F0312_RS21470 (F0312_021440) yjbQ 4450265..4450681 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  F0312_RS21475 (F0312_021445) aphA 4450792..4451505 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=767853 F0312_RS21455 WP_000168305.1 4446258..4446794(-) (ssb) [Escherichia coli strain Ec1115]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=767853 F0312_RS21455 WP_000168305.1 4446258..4446794(-) (ssb) [Escherichia coli strain Ec1115]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489