Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0314_RS22165 Genome accession   NZ_CP126602
Coordinates   4522752..4523288 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Ec1117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4517752..4528288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0314_RS22145 (F0314_022120) soxR 4519480..4519944 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  F0314_RS22150 (F0314_022125) soxS 4520030..4520353 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  F0314_RS22155 (F0314_022130) pdeC 4520356..4521942 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  F0314_RS22160 (F0314_022135) yjcB 4522372..4522653 (+) 282 WP_001341690.1 YjcB family protein -
  F0314_RS22165 (F0314_022140) ssb 4522752..4523288 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  F0314_RS22170 (F0314_022145) uvrA 4523542..4526364 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  F0314_RS22175 (F0314_022150) yjbR 4526399..4526755 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  F0314_RS22180 (F0314_022155) yjbQ 4526759..4527175 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  F0314_RS22185 (F0314_022160) aphA 4527286..4527999 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=767773 F0314_RS22165 WP_000168305.1 4522752..4523288(-) (ssb) [Escherichia coli strain Ec1117]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=767773 F0314_RS22165 WP_000168305.1 4522752..4523288(-) (ssb) [Escherichia coli strain Ec1117]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489