Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O6U12_RS17545 Genome accession   NZ_CP114899
Coordinates   3303107..3303625 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3298107..3308625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS17525 (O6U12_17525) yyzM 3299181..3299387 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  O6U12_RS17530 (O6U12_17530) yyaE 3299438..3301441 (+) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  O6U12_RS17535 (O6U12_17535) ychF 3301568..3302668 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  O6U12_RS17540 (O6U12_17540) rpsF 3302779..3303066 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  O6U12_RS17545 (O6U12_17545) ssbA 3303107..3303625 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  O6U12_RS17550 (O6U12_17550) rpsR 3303669..3303908 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  O6U12_RS17555 (O6U12_17555) xth 3303971..3304729 (+) 759 WP_041336712.1 exodeoxyribonuclease III -
  O6U12_RS17560 (O6U12_17560) ccpB 3304789..3305724 (+) 936 WP_017695815.1 transcriptional regulator CcpB -
  O6U12_RS17565 (O6U12_17565) yyaH 3305780..3306160 (+) 381 WP_015250784.1 VOC family protein -
  O6U12_RS17570 (O6U12_17570) maa 3306176..3306730 (+) 555 WP_041336710.1 sugar O-acetyltransferase -
  O6U12_RS17575 (O6U12_17575) yyaJ 3306764..3308119 (-) 1356 WP_014481501.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=767618 O6U12_RS17545 WP_003219228.1 3303107..3303625(+) (ssbA) [Bacillus subtilis strain]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=767618 O6U12_RS17545 WP_003219228.1 3303107..3303625(+) (ssbA) [Bacillus subtilis strain]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378