Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O6106_RS01620 Genome accession   NZ_CP114895
Coordinates   350290..350826 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CM56     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 345290..355826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6106_RS01600 aphA 345579..346292 (+) 714 WP_001226928.1 acid phosphatase AphA -
  O6106_RS01605 yjbQ 346403..346819 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  O6106_RS01610 yjbR 346823..347179 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  O6106_RS01615 uvrA 347214..350036 (-) 2823 WP_000357732.1 excinuclease ABC subunit UvrA -
  O6106_RS01620 ssb 350290..350826 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  O6106_RS01625 yjcB 350925..351206 (-) 282 WP_001295689.1 YjcB family protein -
  O6106_RS01630 pdeC 351636..353222 (+) 1587 WP_000019545.1 c-di-GMP phosphodiesterase PdeC -
  O6106_RS01635 soxS 353225..353548 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  O6106_RS01640 soxR 353634..354098 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=767515 O6106_RS01620 WP_000168305.1 350290..350826(+) (ssb) [Escherichia coli strain CM56]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=767515 O6106_RS01620 WP_000168305.1 350290..350826(+) (ssb) [Escherichia coli strain CM56]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489