Detailed information NTG0767402

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LL303_RS12835
• Genome accession: NZ_CP126467
• Coordinates: 2497845..2498846 (-)
• Length: 333 a.a.
• NCBI ID: WP_003131994.1
• Uniprot ID: Q9CDL3
• Organism: Lactococcus lactis subsp. lactis strain 303
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2492845..2503846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL303_RS12805 (LL303_12775)	-	2493133..2493498 (-)	366	WP_003131985.1	MerR family transcriptional regulator	-
LL303_RS12810 (LL303_12780)	-	2493599..2494036 (-)	438	WP_010906378.1	low molecular weight protein-tyrosine-phosphatase	-
LL303_RS12815 (LL303_12785)	-	2494180..2494344 (-)	165	WP_003131988.1	hypothetical protein	-
LL303_RS12820 (LL303_12790)	-	2494449..2495066 (-)	618	WP_023164702.1	AAA family ATPase	-
LL303_RS12825 (LL303_12795)	-	2495063..2496247 (-)	1185	WP_095348671.1	ABC transporter permease	-
LL303_RS12830 (LL303_12800)	-	2496824..2497708 (-)	885	WP_012898698.1	XRE/MutR family transcriptional regulator	-
LL303_RS12835 (LL303_12805)	ruvB	2497845..2498846 (-)	1002	WP_003131994.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LL303_RS12840 (LL303_12810)	ruvA	2498972..2499565 (-)	594	WP_003131995.1	Holliday junction branch migration protein RuvA	Machinery gene
LL303_RS12845 (LL303_12815)	hexB	2499678..2501648 (-)	1971	WP_031297070.1	DNA mismatch repair endonuclease MutL	Machinery gene
LL303_RS12850 (LL303_12820)	-	2501777..2502472 (-)	696	WP_095348670.1	hypothetical protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37633.17 Da
• Isoelectric Point: 4.5825

>NTDB_id=767402 LL303_RS12835 WP_003131994.1 2497845..2498846(-) (ruvB) [Lactococcus lactis subsp. lactis strain 303]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=767402 LL303_RS12835 WP_003131994.1 2497845..2498846(-) (ruvB) [Lactococcus lactis subsp. lactis strain 303]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGCCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGAGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCAATTTTGAATGAATTGGAACCTGGCGATGTACT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTAGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCACGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGGTATGTTTACAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: Q9CDL3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae D39	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae TIGR4	78.313	99.7	0.781
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.491	96.697	0.595
ruvB	Helicobacter pylori 26695	51.242	96.697	0.495
ruvB	Synechocystis sp. PCC 6803	51.613	93.093	0.48