Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   O7776_RS13525 Genome accession   NZ_CP114887
Coordinates   2755871..2758192 (-) Length   773 a.a.
NCBI ID   WP_274307558.1    Uniprot ID   -
Organism   Solibacillus daqui strain ZS111008 isolate Daqu     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2750871..2763192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7776_RS13500 - 2750958..2751851 (-) 894 WP_274307554.1 manganese catalase family protein -
  O7776_RS13505 - 2751906..2752118 (-) 213 WP_241369551.1 YuzF family protein -
  O7776_RS13510 dtd 2752192..2752638 (-) 447 WP_274307555.1 D-aminoacyl-tRNA deacylase -
  O7776_RS13515 - 2752657..2754852 (-) 2196 WP_274307556.1 RelA/SpoT family protein -
  O7776_RS13520 - 2755342..2755854 (-) 513 WP_274307557.1 adenine phosphoribosyltransferase -
  O7776_RS13525 recJ 2755871..2758192 (-) 2322 WP_274307558.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  O7776_RS13530 - 2758361..2758684 (-) 324 WP_274307559.1 LapA family protein -
  O7776_RS13535 secDF 2758807..2761080 (-) 2274 WP_274307560.1 protein translocase subunit SecDF -
  O7776_RS13540 - 2761300..2761605 (-) 306 WP_274307561.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 86891.49 Da        Isoelectric Point: 4.9333

>NTDB_id=767401 O7776_RS13525 WP_274307558.1 2755871..2758192(-) (recJ) [Solibacillus daqui strain ZS111008 isolate Daqu]
MIQSQKLWTIQNPDEQLINQLTSQLNISTIAAKILIARGCETVEKAAPLLKIDETAYHDPFLMAGMEQAVARIEQALDCG
EKILVYGDYDADGITSTTVLLNVLLDLGADVDFVIPNRFLHGYGPNENLFRQAHMDGVQLIITVDNGISGIEQVKLAREL
GMDVIITDHHEAGDELPDATIIVHPRIPEGQYPFGELAGVGVAFKLAHALYGELPEHLFEYVAIGTIADLVPLVGENRYL
VQRGLQALKQSHNPWVPALCEASGAVQKEINEETVGFYFGPRLNAIGRLGDAQPGVHFLMSENQLEANNLAKQLNDKNIE
RKKIVEDITNEAIAIIESNEAMRDSLVIVVAGEGWNPGVVGIVASRLVEKYYRPTIVLSIDREKGLAKGSARSIEGFHLY
NELAKNRDILPHFGGHPMAAGMTLPIEHVDELRTRLNEQASACLTEEQLIQKLQIDVPINLNEISVEAIEEIRQLAPFGT
EFPKPNFAIQQVKVKSMRKIGTAENHLKMELEDPYATLDAIGFGKGYLFDEISYGIALSLVGDLQINEWQGNKKPQFMIQ
DVGVNEWQLYDYRGKSQTAHWLAKIPMEQTDFIAFSEQTIIEHAQVIPKEIVHVTDQVSLVDVKKNIVLLDLPENIMLLE
QLLQTVKVERIYAHFYTKNSAYFNGMPSRDHFTWYYGFLKKRPTFNLNQHIQQLSQHIGLNIEVIKFMTKVFFELGFVTI
ENGLTTVNDNAPKKALSEAPSYKMRSKQIELEQKLLYATYSELKQWFDERLSS

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=767401 O7776_RS13525 WP_274307558.1 2755871..2758192(-) (recJ) [Solibacillus daqui strain ZS111008 isolate Daqu]
ATGATCCAGTCACAAAAACTTTGGACAATCCAAAATCCAGATGAACAGCTTATAAACCAATTAACATCACAGCTAAATAT
TTCAACAATTGCAGCGAAAATACTCATTGCACGTGGCTGTGAAACAGTGGAGAAGGCGGCACCGCTATTAAAGATAGATG
AAACTGCCTATCATGATCCATTTTTAATGGCAGGTATGGAACAAGCAGTTGCCCGAATTGAACAAGCATTAGATTGCGGC
GAAAAGATTTTAGTTTATGGAGATTATGATGCCGATGGAATTACAAGTACTACCGTATTGCTTAATGTACTGTTAGATTT
AGGCGCAGATGTTGATTTTGTTATTCCGAATCGTTTTCTGCATGGCTATGGCCCAAATGAAAACTTATTCCGACAAGCAC
ATATGGACGGAGTACAATTAATTATTACTGTTGATAATGGAATTAGCGGTATTGAGCAAGTCAAATTGGCACGCGAACTC
GGTATGGATGTGATTATTACTGATCACCATGAAGCGGGAGATGAATTACCAGATGCTACTATCATCGTGCATCCACGCAT
ACCAGAGGGGCAATACCCATTTGGTGAGCTTGCAGGTGTAGGTGTTGCATTTAAATTGGCACATGCTTTATATGGCGAAT
TGCCAGAACATTTATTTGAATATGTGGCGATAGGAACGATTGCCGATTTAGTGCCTTTAGTTGGCGAAAATCGCTATTTG
GTTCAGCGCGGTTTACAGGCGTTAAAGCAATCGCACAATCCTTGGGTACCAGCGCTTTGTGAAGCTTCTGGAGCTGTTCA
AAAGGAGATTAACGAAGAAACAGTCGGTTTTTACTTTGGTCCGCGCTTAAATGCGATAGGTCGATTAGGTGATGCACAGC
CGGGTGTTCACTTTTTAATGAGTGAAAATCAACTAGAAGCGAACAATCTAGCTAAACAGCTAAATGATAAAAATATAGAG
CGTAAAAAAATTGTTGAAGATATTACAAATGAAGCGATTGCAATCATTGAAAGTAATGAGGCAATGCGAGATTCACTCGT
AATAGTCGTAGCAGGTGAAGGCTGGAATCCAGGCGTTGTCGGCATTGTAGCTTCTCGTTTAGTAGAAAAATATTATCGCC
CTACAATTGTCTTATCTATCGATCGCGAAAAAGGGCTTGCAAAAGGTTCTGCCCGTAGTATTGAAGGGTTCCATTTATAC
AATGAACTTGCGAAAAATCGTGATATTTTACCGCATTTTGGTGGACATCCTATGGCAGCAGGTATGACCTTGCCCATTGA
ACATGTCGATGAACTTCGAACGAGATTGAATGAGCAAGCAAGTGCATGTTTAACTGAAGAACAATTGATTCAAAAGCTTC
AAATTGATGTACCAATTAATCTGAATGAAATTTCGGTAGAAGCAATTGAAGAAATACGTCAGCTCGCTCCATTTGGAACG
GAATTCCCGAAGCCTAATTTTGCAATTCAACAGGTGAAAGTAAAGTCAATGCGTAAAATTGGCACAGCTGAGAACCATTT
AAAAATGGAACTAGAAGATCCCTATGCGACACTAGATGCAATTGGCTTTGGCAAAGGATATTTGTTTGATGAAATTTCGT
ATGGCATTGCATTATCGCTCGTTGGGGATTTACAAATTAATGAATGGCAAGGAAATAAAAAACCACAATTTATGATACAA
GATGTAGGTGTAAATGAATGGCAGCTGTACGATTATCGTGGGAAAAGTCAAACAGCGCATTGGCTTGCCAAAATACCAAT
GGAACAAACGGATTTTATTGCCTTTTCTGAGCAAACAATCATTGAACATGCCCAAGTTATTCCAAAGGAAATTGTTCACG
TAACAGACCAAGTGTCGTTAGTTGATGTAAAAAAGAATATTGTACTTTTAGATTTACCGGAAAATATCATGCTATTAGAA
CAACTATTACAAACCGTAAAAGTAGAACGAATATATGCACATTTTTACACGAAAAACTCAGCGTACTTTAACGGGATGCC
TTCACGCGATCATTTTACATGGTATTATGGATTTCTGAAAAAACGTCCGACCTTTAACTTGAATCAGCATATTCAACAAT
TATCACAACATATCGGACTAAATATTGAAGTAATTAAATTTATGACAAAAGTGTTTTTTGAGCTAGGATTTGTTACAATA
GAGAATGGTTTGACGACTGTCAATGATAATGCGCCGAAGAAAGCATTATCAGAAGCGCCGTCATATAAAATGCGTTCAAA
ACAAATCGAGCTCGAGCAAAAACTATTATATGCCACATATAGTGAATTAAAGCAATGGTTTGATGAACGATTGAGTTCTT
GA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(316-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.512

100

0.485