Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | O2T12_RS25435 | Genome accession | NZ_CP114886 |
| Coordinates | 6058607..6059098 (+) | Length | 163 a.a. |
| NCBI ID | WP_269672013.1 | Uniprot ID | - |
| Organism | Endozoicomonas sp. GU-1 strain Ap1-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 6014648..6063751 | 6058607..6059098 | within | 0 |
Gene organization within MGE regions
Location: 6014648..6063751
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O2T12_RS25230 (O2T12_25230) | - | 6014648..6014989 (+) | 342 | WP_269671973.1 | hypothetical protein | - |
| O2T12_RS25235 (O2T12_25235) | - | 6015169..6015789 (-) | 621 | WP_269671974.1 | helix-turn-helix domain-containing protein | - |
| O2T12_RS25240 (O2T12_25240) | - | 6015782..6016765 (-) | 984 | WP_269671975.1 | hypothetical protein | - |
| O2T12_RS25245 (O2T12_25245) | - | 6016762..6017211 (-) | 450 | WP_269671976.1 | hypothetical protein | - |
| O2T12_RS25250 (O2T12_25250) | - | 6017460..6017957 (-) | 498 | WP_347710335.1 | DUF5677 domain-containing protein | - |
| O2T12_RS25255 (O2T12_25255) | - | 6019250..6019417 (+) | 168 | WP_269671978.1 | hypothetical protein | - |
| O2T12_RS25260 (O2T12_25260) | - | 6019488..6031424 (-) | 11937 | WP_269676666.1 | LPD38 domain-containing protein | - |
| O2T12_RS25265 (O2T12_25265) | - | 6031470..6032543 (-) | 1074 | WP_269676667.1 | hypothetical protein | - |
| O2T12_RS25270 (O2T12_25270) | - | 6032560..6033447 (-) | 888 | WP_269671983.1 | hypothetical protein | - |
| O2T12_RS25275 (O2T12_25275) | - | 6033462..6035606 (-) | 2145 | WP_269671984.1 | hypothetical protein | - |
| O2T12_RS25280 (O2T12_25280) | - | 6035666..6035923 (+) | 258 | WP_269671985.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| O2T12_RS25285 (O2T12_25285) | - | 6035913..6036182 (+) | 270 | WP_269671986.1 | Txe/YoeB family addiction module toxin | - |
| O2T12_RS25290 (O2T12_25290) | - | 6036179..6037819 (-) | 1641 | WP_269676668.1 | hypothetical protein | - |
| O2T12_RS25295 (O2T12_25295) | - | 6037826..6038578 (-) | 753 | WP_269676669.1 | hypothetical protein | - |
| O2T12_RS25300 (O2T12_25300) | - | 6038650..6039255 (-) | 606 | WP_269671990.1 | hypothetical protein | - |
| O2T12_RS25305 (O2T12_25305) | - | 6039297..6039668 (-) | 372 | WP_269671991.1 | hypothetical protein | - |
| O2T12_RS25310 (O2T12_25310) | - | 6039680..6040039 (-) | 360 | WP_269671992.1 | hypothetical protein | - |
| O2T12_RS25315 (O2T12_25315) | - | 6040032..6040637 (-) | 606 | WP_269671993.1 | hypothetical protein | - |
| O2T12_RS25320 (O2T12_25320) | - | 6040735..6040905 (+) | 171 | WP_269676670.1 | hypothetical protein | - |
| O2T12_RS25325 (O2T12_25325) | - | 6041017..6041670 (-) | 654 | WP_269671995.1 | DUF6682 family protein | - |
| O2T12_RS25330 (O2T12_25330) | - | 6041674..6042000 (-) | 327 | WP_269671996.1 | hypothetical protein | - |
| O2T12_RS25335 (O2T12_25335) | - | 6042116..6042982 (-) | 867 | WP_269671997.1 | hypothetical protein | - |
| O2T12_RS25340 (O2T12_25340) | - | 6043017..6044009 (-) | 993 | WP_269671998.1 | hypothetical protein | - |
| O2T12_RS25345 (O2T12_25345) | - | 6044293..6046341 (-) | 2049 | WP_269671999.1 | hypothetical protein | - |
| O2T12_RS25350 (O2T12_25350) | - | 6046451..6048058 (-) | 1608 | WP_269672000.1 | hypothetical protein | - |
| O2T12_RS25355 (O2T12_25355) | - | 6048034..6048393 (-) | 360 | WP_101746078.1 | hypothetical protein | - |
| O2T12_RS25360 (O2T12_25360) | - | 6048396..6048644 (-) | 249 | WP_101745988.1 | hypothetical protein | - |
| O2T12_RS25365 (O2T12_25365) | - | 6048647..6049054 (-) | 408 | WP_163369312.1 | 3TM-type holin | - |
| O2T12_RS25370 (O2T12_25370) | - | 6049047..6049445 (-) | 399 | WP_269672001.1 | hypothetical protein | - |
| O2T12_RS25375 (O2T12_25375) | - | 6049610..6050143 (-) | 534 | WP_269672002.1 | hypothetical protein | - |
| O2T12_RS25380 (O2T12_25380) | - | 6050153..6051508 (-) | 1356 | WP_269672003.1 | DNA cytosine methyltransferase | - |
| O2T12_RS25385 (O2T12_25385) | - | 6051524..6052006 (-) | 483 | WP_269672004.1 | DUF1367 family protein | - |
| O2T12_RS25390 (O2T12_25390) | - | 6052053..6052631 (-) | 579 | WP_269676671.1 | hypothetical protein | - |
| O2T12_RS25395 (O2T12_25395) | - | 6052564..6053664 (-) | 1101 | WP_269672006.1 | hypothetical protein | - |
| O2T12_RS25400 (O2T12_25400) | - | 6053661..6054002 (-) | 342 | WP_269672007.1 | hypothetical protein | - |
| O2T12_RS25405 (O2T12_25405) | - | 6054288..6054929 (+) | 642 | WP_269672008.1 | LexA family transcriptional regulator | - |
| O2T12_RS25410 (O2T12_25410) | - | 6054924..6055403 (-) | 480 | WP_269672009.1 | RusA family crossover junction endodeoxyribonuclease | - |
| O2T12_RS25415 (O2T12_25415) | - | 6055582..6055914 (+) | 333 | WP_101746067.1 | hypothetical protein | - |
| O2T12_RS25420 (O2T12_25420) | - | 6055871..6056275 (+) | 405 | WP_180966407.1 | hypothetical protein | - |
| O2T12_RS25425 (O2T12_25425) | - | 6056265..6057047 (+) | 783 | WP_269676672.1 | ERF family protein | - |
| O2T12_RS25430 (O2T12_25430) | - | 6057048..6058607 (+) | 1560 | WP_269672012.1 | YqaJ viral recombinase family protein | - |
| O2T12_RS25435 (O2T12_25435) | ssb | 6058607..6059098 (+) | 492 | WP_269672013.1 | single-stranded DNA-binding protein | Machinery gene |
| O2T12_RS25440 (O2T12_25440) | - | 6059125..6059445 (+) | 321 | WP_269672014.1 | hypothetical protein | - |
| O2T12_RS25445 (O2T12_25445) | - | 6059486..6060745 (+) | 1260 | WP_269672015.1 | Rha family transcriptional regulator | - |
| O2T12_RS25450 (O2T12_25450) | - | 6060759..6060965 (+) | 207 | WP_101746061.1 | DUF4224 domain-containing protein | - |
| O2T12_RS25455 (O2T12_25455) | - | 6060977..6062029 (+) | 1053 | WP_269672016.1 | tyrosine-type recombinase/integrase | - |
| O2T12_RS25470 (O2T12_25470) | - | 6062433..6062591 (-) | 159 | WP_269676673.1 | hypothetical protein | - |
| O2T12_RS25475 (O2T12_25475) | - | 6062657..6062797 (-) | 141 | WP_269676674.1 | hypothetical protein | - |
| O2T12_RS25480 (O2T12_25480) | - | 6062944..6063267 (-) | 324 | WP_269672018.1 | helicase | - |
| O2T12_RS25485 (O2T12_25485) | - | 6063479..6063751 (-) | 273 | WP_163371979.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18411.40 Da Isoelectric Point: 8.7276
>NTDB_id=767378 O2T12_RS25435 WP_269672013.1 6058607..6059098(+) (ssb) [Endozoicomonas sp. GU-1 strain Ap1-3]
MAASLNRVTLIGRLGKDPDCKATANGNAVTLLSIATEESWKKDGQKQTRTEWHRVVLYGKPAELAAQYLAKGHRVMIEGQ
LQTRKWQDQNGQDRYQTEVVYSGYNGKLLFLEKNPNAQQAQPQNYQSQPGTHQNQYANARDGAHAPQPMQTQQYDSYDDS
IPF
MAASLNRVTLIGRLGKDPDCKATANGNAVTLLSIATEESWKKDGQKQTRTEWHRVVLYGKPAELAAQYLAKGHRVMIEGQ
LQTRKWQDQNGQDRYQTEVVYSGYNGKLLFLEKNPNAQQAQPQNYQSQPGTHQNQYANARDGAHAPQPMQTQQYDSYDDS
IPF
Nucleotide
Download Length: 492 bp
>NTDB_id=767378 O2T12_RS25435 WP_269672013.1 6058607..6059098(+) (ssb) [Endozoicomonas sp. GU-1 strain Ap1-3]
ATGGCCGCATCCCTGAACCGCGTCACCCTTATTGGCAGGCTGGGTAAAGACCCGGACTGCAAAGCCACCGCCAATGGCAA
TGCCGTAACCCTTCTTTCCATCGCCACGGAAGAGAGCTGGAAAAAAGATGGCCAGAAACAGACCCGTACCGAATGGCACC
GGGTAGTACTGTACGGCAAACCTGCTGAACTGGCCGCTCAGTATCTGGCCAAAGGCCACAGAGTCATGATCGAAGGTCAA
CTCCAGACCCGTAAATGGCAGGACCAGAATGGTCAGGATCGCTATCAGACCGAAGTCGTGTACAGCGGGTACAACGGCAA
GCTGCTATTTCTGGAAAAGAACCCCAATGCTCAGCAGGCACAGCCTCAGAACTATCAGTCACAACCAGGCACACATCAGA
ACCAGTACGCCAATGCCCGGGATGGTGCTCATGCTCCCCAGCCCATGCAGACACAACAATATGACTCCTACGACGACTCC
ATCCCATTTTAA
ATGGCCGCATCCCTGAACCGCGTCACCCTTATTGGCAGGCTGGGTAAAGACCCGGACTGCAAAGCCACCGCCAATGGCAA
TGCCGTAACCCTTCTTTCCATCGCCACGGAAGAGAGCTGGAAAAAAGATGGCCAGAAACAGACCCGTACCGAATGGCACC
GGGTAGTACTGTACGGCAAACCTGCTGAACTGGCCGCTCAGTATCTGGCCAAAGGCCACAGAGTCATGATCGAAGGTCAA
CTCCAGACCCGTAAATGGCAGGACCAGAATGGTCAGGATCGCTATCAGACCGAAGTCGTGTACAGCGGGTACAACGGCAA
GCTGCTATTTCTGGAAAAGAACCCCAATGCTCAGCAGGCACAGCCTCAGAACTATCAGTCACAACCAGGCACACATCAGA
ACCAGTACGCCAATGCCCGGGATGGTGCTCATGCTCCCCAGCCCATGCAGACACAACAATATGACTCCTACGACGACTCC
ATCCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
45.977 |
100 |
0.491 |
| ssb | Glaesserella parasuis strain SC1401 |
41.667 |
100 |
0.46 |
| ssb | Neisseria meningitidis MC58 |
37.572 |
100 |
0.399 |
| ssb | Neisseria gonorrhoeae MS11 |
37.572 |
100 |
0.399 |