Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O2T12_RS20235 Genome accession   NZ_CP114886
Coordinates   4870195..4870758 (-) Length   187 a.a.
NCBI ID   WP_269675408.1    Uniprot ID   -
Organism   Endozoicomonas sp. GU-1 strain Ap1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4865195..4875758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T12_RS20210 (O2T12_20210) - 4866784..4867737 (-) 954 WP_269676476.1 hypothetical protein -
  O2T12_RS20215 (O2T12_20215) - 4868095..4868238 (-) 144 WP_269675405.1 hypothetical protein -
  O2T12_RS20220 (O2T12_20220) - 4868716..4868874 (-) 159 WP_163369558.1 hypothetical protein -
  O2T12_RS20225 (O2T12_20225) - 4868864..4869547 (+) 684 WP_269676477.1 hypothetical protein -
  O2T12_RS20230 (O2T12_20230) - 4869639..4870214 (-) 576 WP_269675407.1 5-formyltetrahydrofolate cyclo-ligase -
  O2T12_RS20235 (O2T12_20235) ssb 4870195..4870758 (-) 564 WP_269675408.1 single-stranded DNA-binding protein Machinery gene
  O2T12_RS20240 (O2T12_20240) - 4871120..4872463 (-) 1344 WP_332328206.1 MFS transporter -
  O2T12_RS20245 (O2T12_20245) - 4873243..4873779 (+) 537 WP_269676478.1 hypothetical protein -
  O2T12_RS20250 (O2T12_20250) - 4874397..4874786 (+) 390 WP_269675410.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20719.76 Da        Isoelectric Point: 5.2044

>NTDB_id=767374 O2T12_RS20235 WP_269675408.1 4870195..4870758(-) (ssb) [Endozoicomonas sp. GU-1 strain Ap1-3]
MARGVNKVILIGNLGNDPDVRFTPNGSAVANLSLATSESWKDRNTGQQQEKTEWHRVVIFGKLAEIAQQYLRKGSKVYIE
GKLQTRKWQGQDGQDRYTTEIVVDGFSGQLQMLDGRQEGAMGAPMGGGYQQQAPQQQQSYAPQQPQQYGSPSQQQQQHQP
AQSQQPQSAPQPQPAGGFDDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=767374 O2T12_RS20235 WP_269675408.1 4870195..4870758(-) (ssb) [Endozoicomonas sp. GU-1 strain Ap1-3]
ATGGCTCGAGGCGTTAATAAAGTAATACTGATTGGTAATCTGGGTAACGATCCGGATGTACGTTTTACTCCCAATGGCAG
TGCCGTTGCCAACCTGAGTCTGGCAACCAGTGAGTCCTGGAAAGATCGTAATACCGGTCAGCAACAGGAGAAAACGGAGT
GGCACCGGGTGGTTATTTTCGGCAAGCTGGCTGAGATCGCTCAACAGTACCTTCGTAAAGGATCAAAAGTCTATATCGAA
GGTAAGCTGCAGACACGCAAGTGGCAGGGTCAGGACGGTCAGGATCGGTATACTACCGAGATTGTGGTTGATGGATTCAG
CGGCCAGCTGCAGATGCTGGATGGCCGCCAGGAAGGCGCTATGGGTGCTCCGATGGGAGGTGGCTACCAGCAGCAGGCAC
CGCAACAGCAGCAGTCTTATGCTCCGCAGCAGCCTCAGCAATACGGATCACCATCACAACAACAGCAACAGCATCAACCA
GCGCAGTCGCAGCAACCGCAATCGGCTCCCCAGCCACAGCCTGCTGGTGGTTTTGACGATTTTGATGATGATATCCCGTT
TTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.893

100

0.599
  ssb Glaesserella parasuis strain SC1401

55.026

100

0.556
  ssb Neisseria gonorrhoeae MS11

48.677

100

0.492
  ssb Neisseria meningitidis MC58

49.462

99.465

0.492