Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O5K31_RS06290 Genome accession   NZ_CP114871
Coordinates   1280598..1281110 (+) Length   170 a.a.
NCBI ID   WP_269716456.1    Uniprot ID   -
Organism   Caulobacter sp. NIBR2454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1275598..1286110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5K31_RS06270 pseH 1275781..1276335 (+) 555 WP_269716452.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  O5K31_RS06275 - 1276414..1279353 (+) 2940 WP_269716453.1 hypothetical protein -
  O5K31_RS06280 - 1279422..1280081 (+) 660 WP_269716454.1 hypothetical protein -
  O5K31_RS06285 - 1280093..1280476 (+) 384 WP_269716455.1 hypothetical protein -
  O5K31_RS06290 ssb 1280598..1281110 (+) 513 WP_269716456.1 single-stranded DNA-binding protein Machinery gene
  O5K31_RS06295 - 1281272..1282189 (+) 918 WP_269716457.1 EamA family transporter -
  O5K31_RS06300 bioD 1282160..1282819 (-) 660 WP_269716458.1 dethiobiotin synthase -
  O5K31_RS06305 bioF 1282816..1283979 (-) 1164 WP_269716459.1 8-amino-7-oxononanoate synthase -
  O5K31_RS06310 - 1284118..1285320 (+) 1203 WP_269717009.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  O5K31_RS06315 - 1285313..1285834 (-) 522 WP_269716460.1 superoxide dismutase family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18076.85 Da        Isoelectric Point: 5.3338

>NTDB_id=767263 O5K31_RS06290 WP_269716456.1 1280598..1281110(+) (ssb) [Caulobacter sp. NIBR2454]
MAGSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSESWRDRTSGERKEKTEWHRVVIFNDNLVKVAENYLRKGSTVYI
EGAIQTRKWTDQSGVEKYSTEIVLQKFRGELTMLGGRGDGGAAGASSGGGDFDSGYSGGGGGGFSGGGQRNQPSGPRENF
SADLDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=767263 O5K31_RS06290 WP_269716456.1 1280598..1281110(+) (ssb) [Caulobacter sp. NIBR2454]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCGCTGACCCGGAAATCCGCAGCCTCGGGTCAGGCGA
CCGCGTCGCCAATCTGCGCATCGCCACCTCCGAGAGCTGGCGCGACCGCACCTCGGGCGAGCGCAAGGAAAAGACCGAAT
GGCACCGGGTTGTGATCTTCAACGACAACCTGGTGAAGGTGGCCGAGAACTACCTGCGCAAAGGCTCGACGGTCTATATC
GAGGGCGCGATCCAGACCCGCAAATGGACCGACCAGAGCGGCGTTGAGAAGTACTCCACCGAGATCGTCCTGCAGAAGTT
CCGTGGCGAGCTGACCATGTTGGGCGGTCGCGGCGACGGCGGCGCGGCTGGCGCCAGCTCGGGCGGCGGCGATTTCGACA
GCGGTTACAGCGGTGGCGGCGGTGGTGGTTTCAGCGGCGGCGGCCAGCGCAATCAGCCCAGCGGTCCGCGCGAGAACTTC
TCGGCCGACCTGGACGACGAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.597

100

0.524
  ssb Vibrio cholerae strain A1552

50.568

100

0.524
  ssb Neisseria gonorrhoeae MS11

39.247

100

0.429
  ssb Neisseria meningitidis MC58

38.71

100

0.424