Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O5O48_RS07035 Genome accession   NZ_CP114836
Coordinates   1513999..1514484 (+) Length   161 a.a.
NCBI ID   WP_269688495.1    Uniprot ID   -
Organism   Halopseudomonas sp. MFKK-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1508999..1519484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O48_RS07025 uvrA 1509619..1512450 (-) 2832 WP_228246401.1 excinuclease ABC subunit UvrA -
  O5O48_RS07030 - 1512602..1513972 (+) 1371 WP_269688494.1 MFS transporter -
  O5O48_RS07035 ssb 1513999..1514484 (+) 486 WP_269688495.1 single-stranded DNA-binding protein Machinery gene
  O5O48_RS07040 - 1514629..1515306 (+) 678 WP_228246404.1 histidine phosphatase family protein -
  O5O48_RS07045 - 1515387..1516268 (+) 882 WP_228246405.1 sugar nucleotide-binding protein -
  O5O48_RS07050 - 1516319..1516987 (-) 669 WP_088277395.1 OmpW family outer membrane protein -
  O5O48_RS07055 - 1517194..1517958 (+) 765 WP_269688496.1 DUF3450 domain-containing protein -
  O5O48_RS07060 - 1517955..1519295 (+) 1341 WP_269688497.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17810.82 Da        Isoelectric Point: 5.2870

>NTDB_id=767228 O5O48_RS07035 WP_269688495.1 1513999..1514484(+) (ssb) [Halopseudomonas sp. MFKK-1]
MARGVNKVILIGNVGGDPEVRYLPNGNAVANVTLATTDSWKDKQTGQMQERTEWHRVVFFGRIAEVVGEYARKGSKLYVE
GRLQTREWEKDGVKRYTTEVVVDMGGQMQLLDSRQGGGEQGMGQSRPQRPAAQPQAAAQPQQAAPQQSAPDYDSFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=767228 O5O48_RS07035 WP_269688495.1 1513999..1514484(+) (ssb) [Halopseudomonas sp. MFKK-1]
ATGGCCAGAGGCGTCAACAAGGTAATTTTGATCGGTAATGTCGGTGGTGATCCGGAAGTGCGCTACCTGCCCAATGGCAA
CGCAGTCGCCAACGTCACCCTGGCAACCACTGACAGCTGGAAGGACAAGCAGACTGGCCAGATGCAGGAACGTACCGAGT
GGCACCGTGTGGTGTTCTTTGGCCGTATCGCCGAGGTGGTTGGCGAGTACGCGCGCAAGGGCTCCAAGCTCTACGTCGAA
GGTCGTCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAGGTTGTGGTCGACATGGGCGGTCA
GATGCAGCTGCTCGACAGCCGTCAGGGCGGTGGCGAACAGGGCATGGGCCAGTCCCGCCCGCAGCGTCCCGCGGCCCAGC
CGCAGGCCGCCGCGCAGCCGCAGCAGGCCGCGCCGCAGCAGTCGGCACCGGATTACGACAGCTTTGATGATGACATTCCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.056

100

0.609
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.547
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.472
  ssb Neisseria meningitidis MC58

43.182

100

0.472