Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QN080_RS07345 Genome accession   NZ_CP126309
Coordinates   1728151..1729182 (-) Length   343 a.a.
NCBI ID   WP_043890099.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain LyEC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1723151..1734182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN080_RS07335 - 1725177..1726601 (-) 1425 WP_284183984.1 DUF389 domain-containing protein -
  QN080_RS07340 - 1726623..1728128 (-) 1506 WP_256962611.1 oligosaccharide flippase family protein -
  QN080_RS07345 ruvB 1728151..1729182 (-) 1032 WP_043890099.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QN080_RS07350 - 1729772..1730902 (+) 1131 WP_004584862.1 ISAs1-like element ISPg2 family transposase -
  QN080_RS07355 - 1731119..1733887 (+) 2769 WP_234214974.1 choice-of-anchor J domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37753.99 Da        Isoelectric Point: 5.8564

>NTDB_id=767063 QN080_RS07345 WP_043890099.1 1728151..1729182(-) (ruvB) [Porphyromonas gingivalis strain LyEC01]
MTEEFDIRQERYRGNDGEREVENKLRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANE
LGVGLKITSGPVLDKPGDLAGLLTSLESNDVLFIDEIHRLSPLVEEYLYSAMEDYRIDIMLDKGPSARSIQINLSPFTLV
GATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEVSCSHDAAVEIAGRSRGTPRIANALLRRVRDFAQVKG
SGAIDKPIACYALEALNIDRYGLDNVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGR
EVTELAYTHLGRNPRPHRPSLFD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=767063 QN080_RS07345 WP_043890099.1 1728151..1729182(-) (ruvB) [Porphyromonas gingivalis strain LyEC01]
ATGACTGAAGAATTTGACATTAGACAGGAGCGTTACCGCGGCAACGACGGCGAACGGGAAGTCGAAAACAAGCTACGCCC
CCTGACGTTCGACAGCTTTAGCGGTCAGGACAAGGTGGTGGAGAATCTGAGCATCTTCGTTGCTGCAGCTCGTTTGCGCG
GCGAGGCCTTGGATCATACGCTGCTGCATGGCCCTCCGGGGCTGGGTAAGACCACGCTGTCGAATATCATAGCCAATGAG
CTTGGCGTGGGGCTTAAGATCACTTCCGGTCCCGTCCTCGACAAGCCGGGTGATCTGGCCGGACTCCTCACTTCGTTGGA
ATCCAACGATGTACTTTTCATAGACGAAATACACCGGCTGAGCCCTCTGGTGGAAGAATATCTCTACTCGGCCATGGAGG
ACTACCGTATAGATATAATGCTGGACAAGGGACCCAGCGCGCGCTCCATTCAGATCAATCTCTCCCCCTTCACCCTTGTG
GGAGCTACTACGCGCAGCGGTTTGCTGACAGCACCCCTTCGTGCTCGTTTCGGGATCAATCTCCATCTGGAGTATTACGA
TGTGCATACTATTACCGGTATCGTGGAGCGGAGTGCACGCATTCTGGAGGTGTCCTGTTCGCACGATGCGGCCGTAGAGA
TAGCGGGACGAAGCCGTGGTACGCCTCGTATAGCCAATGCCTTGCTGCGACGTGTAAGGGACTTTGCACAGGTCAAGGGA
TCCGGTGCCATTGACAAACCGATAGCCTGCTATGCTCTCGAAGCCCTGAATATCGACCGCTACGGGCTGGACAATGTGGA
TCACAAGCTCCTCGCCACCATCATAGACAAGTTCGCCGGAGGCCCCGTCGGATTGAGCACCATTGCCACGGCCTTGGGGG
AAGACCCCGGTACGATAGAGGAGGTCTATGAGCCATTCCTGATCAAGGAGGGATTCCTCAAGCGGACACCTCGCGGAAGA
GAAGTGACGGAGCTGGCTTATACGCACTTGGGACGTAATCCCCGTCCGCACCGGCCATCCCTCTTCGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.675

92.42

0.542
  ruvB Streptococcus pneumoniae TIGR4

58.28

91.545

0.534
  ruvB Streptococcus pneumoniae R6

58.28

91.545

0.534
  ruvB Streptococcus pneumoniae D39

58.28

91.545

0.534
  ruvB Synechocystis sp. PCC 6803

52.744

95.627

0.504
  ruvB Helicobacter pylori 26695

50.325

89.796

0.452