Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O4M77_RS00805 Genome accession   NZ_CP114606
Coordinates   178517..179101 (+) Length   194 a.a.
NCBI ID   WP_159123705.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 173517..184101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS00785 (O4M77_00790) tenA 173750..174421 (-) 672 WP_159123702.1 thiaminase II -
  O4M77_RS00790 (O4M77_00795) - 174644..175735 (+) 1092 WP_004781554.1 DUF475 domain-containing protein -
  O4M77_RS00795 (O4M77_00800) - 175918..176976 (+) 1059 WP_159123703.1 RNA-guided endonuclease InsQ/TnpB family protein -
  O4M77_RS00800 (O4M77_00805) - 177101..178465 (+) 1365 WP_159123704.1 MFS transporter -
  O4M77_RS00805 (O4M77_00810) ssb 178517..179101 (+) 585 WP_159123705.1 single-stranded DNA-binding protein Machinery gene
  O4M77_RS00810 (O4M77_00815) - 179170..179634 (-) 465 WP_312332872.1 hotdog fold domain-containing protein -
  O4M77_RS00815 (O4M77_00820) - 179773..180417 (+) 645 WP_323713677.1 TetR/AcrR family transcriptional regulator -
  O4M77_RS00820 (O4M77_00825) ahpC 180569..181132 (+) 564 WP_005232609.1 alkyl hydroperoxide reductase subunit C -
  O4M77_RS00825 (O4M77_00830) - 181377..182255 (+) 879 WP_180012427.1 pirin family protein -
  O4M77_RS00830 (O4M77_00835) - 182670..183977 (+) 1308 WP_125279600.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21229.91 Da        Isoelectric Point: 6.4819

>NTDB_id=766819 O4M77_RS00805 WP_159123705.1 178517..179101(+) (ssb) [Acinetobacter sp. YWS30-1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYSNNSQGGYGSAPQQGGFNNNQGSG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=766819 O4M77_RS00805 WP_159123705.1 178517..179101(+) (ssb) [Acinetobacter sp. YWS30-1]
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAAGGCGATAACGGTTTTAACCAGCCACGTTTTAATAACAATAACCAAGGTG
GCGGTTATAGCAATAATTCACAAGGTGGTTATGGCTCAGCGCCTCAGCAAGGCGGTTTTAACAATAATCAGGGCAGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCACCTGCAGCTGA
TCTGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.751

100

0.515
  ssb Vibrio cholerae strain A1552

44.845

100

0.448
  ssb Neisseria gonorrhoeae MS11

39.267

98.454

0.387
  ssb Neisseria meningitidis MC58

39.267

98.454

0.387