Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O4J62_RS00505 Genome accession   NZ_CP114601
Coordinates   125455..126030 (+) Length   191 a.a.
NCBI ID   WP_096902231.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 125455..140276 125455..126030 within 0


Gene organization within MGE regions


Location: 125455..140276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS00505 (O4J62_00505) ssb 125455..126030 (+) 576 WP_096902231.1 single-stranded DNA-binding protein Machinery gene
  O4J62_RS00510 (O4J62_00510) ahpC 126281..126844 (+) 564 WP_004970191.1 alkyl hydroperoxide reductase subunit C -
  O4J62_RS00515 (O4J62_00515) - 127041..127925 (+) 885 WP_323712630.1 pirin family protein -
  O4J62_RS00520 (O4J62_00520) - 128349..129656 (+) 1308 WP_323712631.1 FAD-dependent oxidoreductase -
  O4J62_RS00525 (O4J62_00525) - 129954..130784 (+) 831 WP_323712632.1 class I SAM-dependent methyltransferase -
  O4J62_RS00530 (O4J62_00530) - 130855..131112 (-) 258 Protein_99 PAAR domain-containing protein -
  O4J62_RS00540 (O4J62_00540) - 131758..131985 (-) 228 WP_004970172.1 hypothetical protein -
  O4J62_RS00545 (O4J62_00545) - 132192..133349 (-) 1158 WP_154320786.1 RNA-guided endonuclease InsQ/TnpB family protein -
  O4J62_RS00550 (O4J62_00550) - 133346..133909 (-) 564 WP_323712859.1 IS607 family transposase -
  O4J62_RS00555 (O4J62_00555) - 133959..135176 (-) 1218 Protein_103 IS3 family transposase -
  O4J62_RS00560 (O4J62_00560) - 135226..135774 (-) 549 Protein_104 IS982-like element ISAba4 family transposase -
  O4J62_RS00565 (O4J62_00565) - 136005..136925 (-) 921 WP_180051492.1 Dyp-type peroxidase -
  O4J62_RS00570 (O4J62_00570) - 137085..137705 (+) 621 WP_178319014.1 LysE family transporter -
  O4J62_RS00575 (O4J62_00575) - 137819..138205 (+) 387 WP_180096434.1 hypothetical protein -
  O4J62_RS00580 (O4J62_00580) znuB 138214..139014 (-) 801 WP_136144783.1 zinc ABC transporter permease subunit ZnuB -
  O4J62_RS00585 (O4J62_00585) znuC 139018..139806 (-) 789 WP_131261255.1 zinc ABC transporter ATP-binding protein ZnuC -
  O4J62_RS00590 (O4J62_00590) - 139782..140276 (-) 495 WP_004970151.1 transcriptional repressor -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21036.83 Da        Isoelectric Point: 6.4800

>NTDB_id=766780 O4J62_RS00505 WP_096902231.1 125455..126030(+) (ssb) [Acinetobacter towneri strain TT1-3_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSANRGQSDQQDGGFAQPRFNNNQGGYGNQNQAPATGYANQNQGGFNQNQGG
GYANNNPSGFAPKPQAAPATAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=766780 O4J62_RS00505 WP_096902231.1 125455..126030(+) (ssb) [Acinetobacter towneri strain TT1-3_T]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTAGGTCGTGATCCTGAAACAAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTTTCTATCGCAACCAGTGATGTCTGGACAGACAAAAACACAGGTGAGCGTAAAGAGCAAACAGAGTGGC
ATCGCATTGTTTTACATAACCGTTTAGGCGAGATTGCACAGCAATATTTACGCAAAGGTTCTAAAGTATATATTGAAGGT
TCATTGCGTACGCGTCAGTGGACAGACCAAAATGGTCAAGAGCGTTACACCACTGAAATTCGTGGCGATCAAATGCAAAT
GCTCGACTCTGCTAACCGTGGACAATCTGACCAGCAAGATGGTGGCTTTGCTCAACCACGTTTTAACAATAACCAAGGCG
GTTATGGCAATCAGAACCAAGCTCCAGCCACAGGTTATGCGAATCAAAATCAAGGCGGTTTTAACCAAAATCAGGGTGGT
GGCTATGCCAACAATAACCCAAGTGGTTTTGCACCGAAGCCACAAGCTGCGCCTGCAACCGCACCTGCAGATTTAGATGA
TGATTTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.769

100

0.56
  ssb Vibrio cholerae strain A1552

46.429

100

0.476
  ssb Neisseria gonorrhoeae MS11

40.314

100

0.403
  ssb Neisseria meningitidis MC58

38.542

100

0.387