Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O4546_RS01625 Genome accession   NZ_CP114590
Coordinates   329356..329904 (+) Length   182 a.a.
NCBI ID   WP_069361768.1    Uniprot ID   A0AB36KAL9
Organism   Salinivibrio kushneri strain TGB19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 324356..334904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4546_RS01610 (O4546_01610) galU 326291..327154 (-) 864 WP_269587318.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  O4546_RS01615 (O4546_01615) - 327334..328299 (-) 966 WP_269587319.1 DHH family phosphoesterase -
  O4546_RS01620 (O4546_01620) - 328363..329070 (-) 708 WP_069361767.1 LuxR C-terminal-related transcriptional regulator -
  O4546_RS01625 (O4546_01625) ssb 329356..329904 (+) 549 WP_069361768.1 single-stranded DNA-binding protein Machinery gene
  O4546_RS01630 (O4546_01630) - 330010..331170 (-) 1161 WP_077520977.1 alpha-hydroxy acid oxidase -
  O4546_RS01635 (O4546_01635) - 331315..332202 (-) 888 WP_069361770.1 LysR family transcriptional regulator -
  O4546_RS01640 (O4546_01640) csrD 332323..334302 (+) 1980 WP_069361771.1 RNase E specificity factor CsrD -
  O4546_RS01645 (O4546_01645) - 334299..334808 (+) 510 WP_077457729.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20440.48 Da        Isoelectric Point: 5.2257

>NTDB_id=766677 O4546_RS01625 WP_069361768.1 329356..329904(+) (ssb) [Salinivibrio kushneri strain TGB19]
MASRGINKVILIGNLGNDPEIRYLPNGGAVANLSLATSESWRDKNTGEMREKTEWHRVVLFGKTAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVAVQPFSGSMQMLGGRGGQNQGQPMQQSPQQQGGWGQPQQPKQPQQNFNQQPPQQQSAP
QPQSQPQQQYNDLPDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=766677 O4546_RS01625 WP_069361768.1 329356..329904(+) (ssb) [Salinivibrio kushneri strain TGB19]
ATGGCCAGCCGTGGCATAAACAAAGTCATCTTGATTGGTAATTTGGGCAACGATCCGGAAATCCGTTACCTCCCCAACGG
CGGTGCGGTGGCGAACCTCAGCCTCGCGACCTCAGAGTCATGGCGTGATAAAAACACCGGTGAGATGCGTGAGAAAACAG
AGTGGCACCGTGTTGTGCTGTTCGGTAAAACCGCCGAAGTGGCGGGTGAGTATCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAACTGCAGACACGTAAGTGGCAAGACCAAAACGGGCAAGACCGTTACACCACGGAAGTCGCGGTACAGCCGTT
TAGTGGCAGCATGCAAATGCTGGGTGGCCGTGGTGGTCAGAACCAAGGTCAGCCCATGCAGCAGTCACCGCAGCAGCAAG
GTGGGTGGGGACAGCCTCAGCAGCCTAAGCAACCACAGCAAAACTTTAACCAACAGCCACCGCAACAACAGTCGGCACCA
CAGCCACAGTCGCAACCTCAGCAGCAATATAACGATTTGCCTGATTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.505

100

0.731
  ssb Glaesserella parasuis strain SC1401

54.011

100

0.555
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.456
  ssb Neisseria meningitidis MC58

44.693

98.352

0.44