Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8M53_RS01470 Genome accession   NZ_CP114588
Coordinates   289023..289571 (+) Length   182 a.a.
NCBI ID   WP_077772663.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 284023..294571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8M53_RS01455 (N8M53_01455) galU 285957..286820 (-) 864 WP_269579217.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N8M53_RS01460 (N8M53_01460) - 287002..287967 (-) 966 WP_269579218.1 DHH family phosphoesterase -
  N8M53_RS01465 (N8M53_01465) - 288031..288738 (-) 708 WP_269579219.1 LuxR C-terminal-related transcriptional regulator -
  N8M53_RS01470 (N8M53_01470) ssb 289023..289571 (+) 549 WP_077772663.1 single-stranded DNA-binding protein Machinery gene
  N8M53_RS01475 (N8M53_01475) - 289672..290832 (-) 1161 WP_269579220.1 alpha-hydroxy acid oxidase -
  N8M53_RS01480 (N8M53_01480) - 290978..291865 (-) 888 WP_077772665.1 LysR family transcriptional regulator -
  N8M53_RS01485 (N8M53_01485) csrD 291986..293965 (+) 1980 WP_269579221.1 RNase E specificity factor CsrD -
  N8M53_RS01490 (N8M53_01490) - 293962..294471 (+) 510 WP_269579222.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20440.44 Da        Isoelectric Point: 4.9164

>NTDB_id=766646 N8M53_RS01470 WP_077772663.1 289023..289571(+) (ssb) [Salinivibrio kushneri strain TGB11]
MASRGINKVILIGNLGNDPEIRYLPNGGAVANLSLATSESWRDKNTGEMREKTEWHRVVLFGKTAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVAVQPFSGSMQMLGGRGGQNQGQPMQQSPQQQGGWGQPQQPQQPQQNFNQQPPQQQSAP
QPQSQPQQQYNDLPDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=766646 N8M53_RS01470 WP_077772663.1 289023..289571(+) (ssb) [Salinivibrio kushneri strain TGB11]
ATGGCCAGCCGTGGCATAAACAAAGTCATCTTGATTGGTAATTTGGGCAACGATCCGGAAATCCGTTACCTCCCCAACGG
CGGTGCGGTGGCGAACCTCAGCCTCGCGACCTCAGAGTCATGGCGTGATAAAAACACCGGTGAGATGCGTGAGAAAACAG
AGTGGCACCGCGTTGTGCTGTTCGGTAAAACCGCCGAAGTCGCGGGTGAATATCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGCCAATTGCAAACACGCAAATGGCAAGACCAAAACGGGCAAGACCGTTACACCACGGAAGTCGCGGTACAACCGTT
TAGCGGCAGCATGCAAATGCTGGGTGGCCGTGGTGGTCAGAACCAAGGTCAGCCGATGCAGCAGTCACCGCAGCAACAAG
GTGGATGGGGACAGCCTCAGCAGCCTCAACAACCACAGCAAAACTTTAACCAACAGCCACCGCAGCAGCAGTCGGCACCG
CAGCCACAGTCTCAGCCTCAGCAGCAATATAACGACCTGCCTGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.505

100

0.731
  ssb Glaesserella parasuis strain SC1401

54.011

100

0.555
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.456
  ssb Neisseria meningitidis MC58

44.809

100

0.451