Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O4598_RS01560 Genome accession   NZ_CP114586
Coordinates   308591..309139 (+) Length   182 a.a.
NCBI ID   WP_069361768.1    Uniprot ID   A0AB36KAL9
Organism   Salinivibrio kushneri strain TGB4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 303591..314139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4598_RS01545 (O4598_01545) galU 305525..306388 (-) 864 WP_069361765.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  O4598_RS01550 (O4598_01550) - 306569..307534 (-) 966 WP_077649954.1 acetyltransferase -
  O4598_RS01555 (O4598_01555) - 307598..308305 (-) 708 WP_269599886.1 LuxR C-terminal-related transcriptional regulator -
  O4598_RS01560 (O4598_01560) ssb 308591..309139 (+) 549 WP_069361768.1 single-stranded DNA-binding protein Machinery gene
  O4598_RS01565 (O4598_01565) - 309245..310405 (-) 1161 WP_269599887.1 alpha-hydroxy acid oxidase -
  O4598_RS01570 (O4598_01570) - 310550..311437 (-) 888 WP_269599888.1 LysR family transcriptional regulator -
  O4598_RS01575 (O4598_01575) csrD 311558..313537 (+) 1980 WP_269599890.1 RNase E specificity factor CsrD -
  O4598_RS01580 (O4598_01580) - 313534..314043 (+) 510 WP_077484131.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20440.48 Da        Isoelectric Point: 5.2257

>NTDB_id=766617 O4598_RS01560 WP_069361768.1 308591..309139(+) (ssb) [Salinivibrio kushneri strain TGB4]
MASRGINKVILIGNLGNDPEIRYLPNGGAVANLSLATSESWRDKNTGEMREKTEWHRVVLFGKTAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVAVQPFSGSMQMLGGRGGQNQGQPMQQSPQQQGGWGQPQQPKQPQQNFNQQPPQQQSAP
QPQSQPQQQYNDLPDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=766617 O4598_RS01560 WP_069361768.1 308591..309139(+) (ssb) [Salinivibrio kushneri strain TGB4]
ATGGCCAGCCGTGGCATAAACAAAGTCATCTTGATTGGTAATTTGGGCAACGATCCGGAAATCCGTTACCTCCCCAACGG
CGGTGCGGTGGCGAACCTCAGCCTCGCGACCTCAGAGTCATGGCGTGATAAAAACACCGGTGAGATGCGTGAGAAAACAG
AGTGGCACCGTGTTGTGCTGTTCGGTAAAACCGCCGAAGTGGCAGGTGAGTATCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGTCAACTGCAGACACGTAAGTGGCAAGACCAAAACGGGCAAGACCGTTACACCACGGAAGTCGCGGTACAGCCGTT
TAGTGGCAGCATGCAAATGCTGGGTGGCCGTGGTGGTCAGAACCAAGGTCAGCCGATGCAGCAGTCACCGCAGCAGCAAG
GTGGATGGGGACAGCCTCAGCAGCCTAAGCAACCACAGCAAAACTTTAACCAACAGCCACCGCAACAACAGTCGGCACCA
CAGCCACAGTCGCAACCTCAGCAGCAATATAACGATTTGCCTGATTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.505

100

0.731
  ssb Glaesserella parasuis strain SC1401

54.011

100

0.555
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.456
  ssb Neisseria meningitidis MC58

44.693

98.352

0.44