Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LpnA194_RS04725 Genome accession   NZ_CP114578
Coordinates   1032605..1033669 (+) Length   354 a.a.
NCBI ID   WP_027226226.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1027605..1038669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS04715 (LpnA194_00944) - 1028647..1031031 (-) 2385 WP_027226227.1 penicillin-binding protein 1A -
  LpnA194_RS04720 (LpnA194_00945) - 1031181..1032188 (-) 1008 WP_013101264.1 hypothetical protein -
  LpnA194_RS04725 (LpnA194_00946) pilM 1032605..1033669 (+) 1065 WP_027226226.1 type IV pilus assembly protein PilM Machinery gene
  LpnA194_RS04730 (LpnA194_00947) pilN 1033673..1034221 (+) 549 WP_013101266.1 PilN domain-containing protein Machinery gene
  LpnA194_RS04735 (LpnA194_00948) pilO 1034235..1034834 (+) 600 WP_013101267.1 type 4a pilus biogenesis protein PilO Machinery gene
  LpnA194_RS04740 (LpnA194_00949) pilP 1034831..1035415 (+) 585 WP_013101268.1 pilus assembly protein PilP Machinery gene
  LpnA194_RS04745 (LpnA194_00950) pilQ 1035419..1037515 (+) 2097 WP_011946023.1 type IV pilus secretin PilQ Machinery gene
  LpnA194_RS04750 (LpnA194_00951) aroK 1037962..1038489 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38799.82 Da        Isoelectric Point: 5.0367

>NTDB_id=766491 LpnA194_RS04725 WP_027226226.1 1032605..1033669(+) (pilM) [Legionella pneumophila strain A194]
MLKLLKPKHRSILGIDISSSAVKILEISGSGEDICVEGYGREEIPASALEGNMIKDVDVVANCIKKLVERLRFTSKNVAL
AVPDSAVISKVVQINEGLTDLEMEELVVIEADKYIPYPIDEINLDFEVLGHSAKSSSLLDVLIVASRAENVNTRVEAAHR
AGLEPKIVDVESYAVERSVQQIAQELPAGGQDKIVAIVDIGANYTHLFVLHGMRLIFSREEKFGGMQLVEAIAEHYHMNL
EQAIALKNQGKLPEDYESAVLEPFKDMILLQIKRTLQFFYSTSQHGFVDHILLAGGMARQPGLAALIQEQLGVTTTVANP
LSHMSFGKKVNLDVINNDAPTLMVACGLALRHVE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=766491 LpnA194_RS04725 WP_027226226.1 1032605..1033669(+) (pilM) [Legionella pneumophila strain A194]
GTGCTCAAATTGCTTAAACCTAAGCATCGTTCAATTCTTGGCATTGACATCAGTTCTTCCGCAGTGAAAATTCTGGAAAT
ATCAGGTTCCGGAGAGGACATTTGTGTTGAAGGATATGGTCGTGAAGAAATACCTGCCTCTGCCCTAGAAGGAAATATGA
TCAAGGATGTCGATGTAGTAGCGAATTGCATCAAAAAATTGGTAGAAAGATTGAGGTTTACATCTAAAAATGTGGCATTG
GCTGTGCCTGATTCAGCTGTTATCAGTAAAGTAGTGCAAATTAATGAAGGATTGACTGATCTTGAAATGGAGGAGCTTGT
CGTTATTGAGGCGGATAAGTATATCCCTTACCCAATAGATGAAATAAACCTGGATTTTGAAGTGTTAGGCCATTCAGCCA
AGAGTTCATCACTGCTTGATGTTTTAATTGTGGCTTCAAGGGCAGAAAACGTTAATACCCGTGTTGAAGCAGCTCATAGA
GCAGGGTTGGAACCTAAAATTGTTGATGTTGAATCTTATGCAGTAGAGCGCTCAGTACAACAAATTGCGCAAGAATTACC
AGCTGGGGGACAAGACAAAATTGTGGCAATAGTAGATATTGGAGCCAATTATACTCACTTGTTTGTTTTGCACGGTATGC
GACTAATCTTTTCAAGAGAAGAAAAATTTGGTGGTATGCAACTTGTTGAAGCTATTGCAGAACACTATCATATGAATTTG
GAGCAGGCTATTGCCCTAAAAAATCAGGGTAAATTACCAGAGGACTATGAATCTGCTGTATTAGAACCTTTTAAGGACAT
GATTCTTTTGCAGATCAAACGTACTTTGCAGTTTTTTTATTCAACCAGTCAACATGGTTTTGTAGACCATATTTTATTGG
CAGGAGGAATGGCCAGGCAACCAGGATTGGCAGCGCTTATTCAAGAACAGTTAGGAGTGACTACTACAGTGGCAAACCCG
CTATCCCATATGTCTTTTGGTAAAAAAGTGAATTTGGATGTGATTAACAATGATGCGCCTACACTAATGGTGGCTTGTGG
GTTGGCTTTGAGGCATGTCGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

98.87

100

0.989
  comM Acinetobacter nosocomialis M2

42.938

100

0.429
  pilM Acinetobacter baumannii D1279779

42.655

100

0.427
  comM Acinetobacter baylyi ADP1

40.96

100

0.41