Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LpnA194_RS04145 Genome accession   NZ_CP114578
Coordinates   920958..921275 (+) Length   105 a.a.
NCBI ID   WP_044498811.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 915958..926275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS04125 (LpnA194_00826) - 916110..917549 (+) 1440 WP_044498818.1 cation:proton antiporter -
  LpnA194_RS04130 (LpnA194_00827) nadC 917546..918388 (+) 843 WP_010946543.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LpnA194_RS04135 (LpnA194_00828) - 918385..919476 (+) 1092 WP_040184961.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  LpnA194_RS04140 (LpnA194_00829) - 919451..920866 (+) 1416 WP_010946545.1 M20 family metallopeptidase -
  LpnA194_RS04145 (LpnA194_00830) comEA 920958..921275 (+) 318 WP_044498811.1 ComEA family DNA-binding protein Machinery gene
  LpnA194_RS04150 (LpnA194_00831) - 921471..922508 (+) 1038 WP_011213320.1 rod shape-determining protein -
  LpnA194_RS04155 (LpnA194_00832) mreC 922486..923394 (+) 909 WP_010946548.1 rod shape-determining protein MreC -
  LpnA194_RS04160 (LpnA194_00833) mreD 923391..923870 (+) 480 WP_010946549.1 rod shape-determining protein MreD -
  LpnA194_RS04165 (LpnA194_00834) - 923806..924408 (-) 603 WP_040185055.1 pseudouridine synthase -
  LpnA194_RS04170 (LpnA194_00835) - 924669..925367 (+) 699 WP_080307433.1 protein tyrosine phosphatase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11789.78 Da        Isoelectric Point: 10.5233

>NTDB_id=766490 LpnA194_RS04145 WP_044498811.1 920958..921275(+) (comEA) [Legionella pneumophila strain A194]
MKARLIAILLSFIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVYSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
SEVKGIGQRFVDKNREKLKEIFVIN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=766490 LpnA194_RS04145 WP_044498811.1 920958..921275(+) (comEA) [Legionella pneumophila strain A194]
ATGAAAGCAAGACTCATTGCTATTTTGTTGTCATTTATCGTTATCCCTTTCTCTTCTCAAGCTGAGAACGAGCCTCAAAA
AACTCCAGCTAAACAAGTCCTTGTTAAGGGCAAGATTAATCTTAATACAGCGGATGTGTATTCTTTAACAGGCTCTTTTA
AAGGGATAGGAAAAAAACGGGCTGAAGCTATTATTGCTTATAGAGAGAATCATCAAGGGTTTAAATCTCTGGAAGAGCTT
TCGGAAGTCAAGGGTATAGGGCAGCGTTTTGTAGATAAAAATAGAGAAAAACTGAAAGAAATTTTCGTTATTAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

99.048

100

0.99
  comEA Legionella pneumophila strain ERS1305867

99.048

100

0.99
  comE1/comEA Haemophilus influenzae Rd KW20

35.455

100

0.371
  comEA Staphylococcus aureus N315

38.384

94.286

0.362
  comEA Staphylococcus aureus MW2

38.384

94.286

0.362