Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LpnH3D14_RS02045 Genome accession   NZ_CP114576
Coordinates   446342..446821 (-) Length   159 a.a.
NCBI ID   WP_011945554.1    Uniprot ID   A0A378K2W0
Organism   Legionella pneumophila strain H3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 441342..451821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS02005 (LpnH3D14_00398) rplO 441474..441908 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  LpnH3D14_RS02010 (LpnH3D14_00399) secY 441911..443239 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  LpnH3D14_RS02015 rpmJ 443256..443369 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  LpnH3D14_RS02020 (LpnH3D14_00400) rpsM 443447..443803 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  LpnH3D14_RS02025 (LpnH3D14_00401) rpsK 443827..444225 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  LpnH3D14_RS02030 (LpnH3D14_00402) rpsD 444242..444862 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  LpnH3D14_RS02035 (LpnH3D14_00403) - 444881..445873 (+) 993 WP_011945553.1 DNA-directed RNA polymerase subunit alpha -
  LpnH3D14_RS02040 (LpnH3D14_00404) rplQ 445892..446275 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  LpnH3D14_RS02045 (LpnH3D14_00405) ssb 446342..446821 (-) 480 WP_011945554.1 single-stranded DNA-binding protein Machinery gene
  LpnH3D14_RS02050 (LpnH3D14_00406) - 446905..448272 (-) 1368 WP_269565444.1 MFS transporter -
  LpnH3D14_RS02055 (LpnH3D14_00407) fabL 448434..449192 (+) 759 WP_014843284.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LpnH3D14_RS02060 (LpnH3D14_00408) - 449263..449676 (+) 414 WP_010946108.1 acyl carrier protein -
  LpnH3D14_RS02065 (LpnH3D14_00409) - 449676..450572 (+) 897 WP_027224263.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17640.40 Da        Isoelectric Point: 4.6616

>NTDB_id=766444 LpnH3D14_RS02045 WP_011945554.1 446342..446821(-) (ssb) [Legionella pneumophila strain H3]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGNGATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=766444 LpnH3D14_RS02045 WP_011945554.1 446342..446821(-) (ssb) [Legionella pneumophila strain H3]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAATGGTGCCACTAATTACGATGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378K2W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.585
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434