Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O4000_RS22520 Genome accession   NZ_CP114564
Coordinates   4616673..4617197 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain 2953647     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4611673..4622197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4000_RS22510 (O4000_22510) - 4613517..4613798 (+) 282 WP_003844730.1 YjcB family protein -
  O4000_RS22515 (O4000_22515) - 4613882..4616191 (-) 2310 WP_016149407.1 autotransporter outer membrane beta-barrel domain-containing protein -
  O4000_RS22520 (O4000_22520) ssb 4616673..4617197 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  O4000_RS22525 (O4000_22525) uvrA 4617449..4620271 (+) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  O4000_RS22530 (O4000_22530) - 4620387..4620743 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  O4000_RS22535 (O4000_22535) aphA 4620871..4621584 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=766414 O4000_RS22520 WP_003826621.1 4616673..4617197(-) (ssb) [Citrobacter freundii strain 2953647]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=766414 O4000_RS22520 WP_003826621.1 4616673..4617197(-) (ssb) [Citrobacter freundii strain 2953647]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGTGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCTCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5