Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O4444_RS07410 Genome accession   NZ_CP114549
Coordinates   1596995..1597489 (-) Length   164 a.a.
NCBI ID   WP_088371369.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain ALM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1591995..1602489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4444_RS07395 (O4444_07395) gloA 1592252..1592779 (+) 528 WP_010893902.1 lactoylglutathione lyase -
  O4444_RS07400 (O4444_07400) - 1592956..1594152 (-) 1197 WP_229716589.1 cation:proton antiporter -
  O4444_RS07405 (O4444_07405) - 1594463..1595374 (-) 912 WP_010893900.1 class I SAM-dependent methyltransferase -
  O4444_RS07410 (O4444_07410) ssb 1596995..1597489 (-) 495 WP_088371369.1 single-stranded DNA-binding protein Machinery gene
  O4444_RS07415 (O4444_07415) - 1597738..1598739 (+) 1002 WP_088371367.1 polyprenyl synthetase family protein -
  O4444_RS07420 (O4444_07420) cyoA 1599207..1600166 (+) 960 WP_088371365.1 ubiquinol oxidase subunit II -
  O4444_RS07425 (O4444_07425) cyoB 1600160..1602157 (+) 1998 WP_088371363.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18215.19 Da        Isoelectric Point: 5.9575

>NTDB_id=766338 O4444_RS07410 WP_088371369.1 1596995..1597489(-) (ssb) [Xylella fastidiosa subsp. pauca strain ALM4]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSTPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=766338 O4444_RS07410 WP_088371369.1 1596995..1597489(-) (ssb) [Xylella fastidiosa subsp. pauca strain ALM4]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGTCAGGATGGTCAGGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGCCAGGATT
ACGCCCCACGTCGCCAGGCCCGTCAGCCGTCACAGTCGCCGCAATCTTCAACGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.04

100

0.433
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433