Detailed information NTG0766288

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QIH95_RS07435
• Genome accession: NZ_CP126013
• Coordinates: 1568921..1569979 (+)
• Length: 352 a.a.
• NCBI ID: WP_038958818.1
• Uniprot ID: A0ABV2S7S2
• Organism: Bradyrhizobium japonicum strain S11L-Bj
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1563921..1574979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QIH95_RS07415 (QIH95_07405)	-	1564846..1566594 (-)	1749	WP_248889150.1	methyl-accepting chemotaxis protein	-
QIH95_RS07420 (QIH95_07410)	-	1566798..1567544 (+)	747	WP_014492334.1	YebC/PmpR family DNA-binding transcriptional regulator	-
QIH95_RS07425 (QIH95_07415)	ruvC	1567783..1568310 (+)	528	WP_038958820.1	crossover junction endodeoxyribonuclease RuvC	-
QIH95_RS07430 (QIH95_07420)	ruvA	1568307..1568924 (+)	618	WP_038958819.1	Holliday junction branch migration protein RuvA	-
QIH95_RS07435 (QIH95_07425)	ruvB	1568921..1569979 (+)	1059	WP_038958818.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QIH95_RS07440 (QIH95_07430)	-	1570131..1571045 (+)	915	WP_014492330.1	metallophosphoesterase	-
QIH95_RS07445 (QIH95_07435)	-	1571177..1572880 (-)	1704	WP_035708423.1	recombinase family protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 38070.27 Da
• Isoelectric Point: 5.5148

>NTDB_id=766288 QIH95_RS07435 WP_038958818.1 1568921..1569979(+) (ruvB) [Bradyrhizobium japonicum strain S11L-Bj]
MSDPKANRMVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLGKTTLAQIVAKEL
GVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVG
ATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVTRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADA
ASIDRKIADHALSALEVDAAGLDAMDRRYLTTIAQNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTPRGRL
LTSHAFRHLGIAEPSRDAAAQFGLFGSDESDD

Nucleotide

• Length: 1059 bp

>NTDB_id=766288 QIH95_RS07435 WP_038958818.1 1568921..1569979(+) (ruvB) [Bradyrhizobium japonicum strain S11L-Bj]
GTGAGCGACCCCAAGGCCAACCGCATGGTCTCGCCCGAGCGCCGCAGCGACGATGTCGGCGACACCGCGCTGCGTCCGCA
ATCGCTGTCCGACTTCGTCGGCCAGCAGCAGGCGCGCAAGAACCTCTCGATCTTCATCGAGGCGGCACGCAAGCGCGGCG
AGGCGCTCGATCACGTGCTGTTCGTAGGCCCCCCCGGCCTCGGCAAGACCACGCTGGCGCAGATCGTCGCCAAGGAGCTC
GGCGTCGGCTTTCGCGCCACCTCGGGTCCCGTGATCGCGAAGGCCGGCGATCTCGCCGCACTCCTCACCAACCTCGAAGA
GCGCGACGTGCTCTTCATCGACGAGATCCATCGCCTGAGCCCGGCGGTGGAAGAGGTGCTCTATCCCGCGATGGAGGATT
TTCAGCTCGACCTGATCATCGGCGAGGGCCCGGCGGCACGCTCGGTGAAGATCGAGCTGTCGAAATTCACGCTCGTCGGC
GCCACCACACGCGCCGGCCTGCTCACCAATCCCTTGCGCGATCGCTTCGGCATCCCGGTCCGCCTCAACTTCTATACGAT
CGAAGAGCTGGAAAGCATCGTCACCCGCGGCGCGCGCGTGCTCAATGTCGGCATGAGCGCCGACGGCGCCAACGAGATCG
CGCGCCGCGCCCGTGGCACGCCGCGCATCGCCGGCCGCCTGCTGCGCCGCGTGCGCGATTTCGCCTCCGCCGCCGATGCC
GCCTCGATCGACCGCAAGATCGCCGACCACGCGCTGAGCGCGCTCGAGGTCGACGCCGCCGGCCTTGATGCCATGGACCG
CCGCTACCTCACGACCATCGCGCAGAACTATGGCGGCGGCCCGGTCGGCGTCGAGACGATGGCTGCCGCGCTGTCCGAGC
CGCGCGATGCGATCGAGGACATCATCGAGCCTTATCTTATCCAGTGCGGCTATCTCCAGCGCACCCCGCGCGGCCGCCTG
CTCACCTCGCACGCCTTCCGCCATCTCGGCATCGCCGAGCCCTCGCGCGATGCTGCGGCACAGTTCGGCCTGTTCGGCTC
GGACGAGAGCGACGACTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (24-182)

• RuvB C-terminal winged helix domain (WHD_RuvB) (260-329)

• RuvB AAA lid domain (AAA_lid_4) (185-258)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	56.024	94.318	0.528
ruvB	Streptococcus pneumoniae TIGR4	53.231	92.33	0.491
ruvB	Streptococcus pneumoniae R6	54.14	89.205	0.483
ruvB	Streptococcus pneumoniae D39	54.14	89.205	0.483
ruvB	Helicobacter pylori 26695	54.662	88.352	0.483
ruvB	Synechocystis sp. PCC 6803	50.152	93.466	0.469