Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QIH94_RS21355 Genome accession   NZ_CP126006
Coordinates   4376917..4377411 (+) Length   164 a.a.
NCBI ID   WP_028156151.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain S06K-Bj     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4371917..4382411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH94_RS21335 (QIH94_21335) - 4372922..4373680 (-) 759 WP_248877704.1 outer membrane protein -
  QIH94_RS21340 (QIH94_21340) - 4373825..4374577 (-) 753 WP_248877703.1 outer membrane protein -
  QIH94_RS21345 (QIH94_21345) - 4374804..4375475 (-) 672 WP_028156149.1 outer membrane protein -
  QIH94_RS21350 (QIH94_21350) - 4375710..4376465 (-) 756 WP_028156150.1 outer membrane protein -
  QIH94_RS21355 (QIH94_21355) ssb 4376917..4377411 (+) 495 WP_028156151.1 single-stranded DNA-binding protein Machinery gene
  QIH94_RS21360 (QIH94_21360) - 4377613..4378011 (+) 399 WP_041960270.1 DUF2306 domain-containing protein -
  QIH94_RS21365 (QIH94_21365) gyrA 4378180..4380912 (+) 2733 WP_304489912.1 DNA gyrase subunit A -
  QIH94_RS21370 (QIH94_21370) - 4381016..4381921 (-) 906 WP_304489911.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17480.41 Da        Isoelectric Point: 6.9877

>NTDB_id=766166 QIH94_RS21355 WP_028156151.1 4376917..4377411(+) (ssb) [Bradyrhizobium japonicum strain S06K-Bj]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGAEKYSTEVVLQGFNSTLTMLDGRGGGGGGGSFGDEPGGDFGSSGPVSSAPRRAVAAGGGRNSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=766166 QIH94_RS21355 WP_028156151.1 4376917..4377411(+) (ssb) [Bradyrhizobium japonicum strain S06K-Bj]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCCGAAATCCGCCGTACCCAGGACGGGCG
GCCGATCGCGAATTTGAGCATCGCCACCTCGGAGACCTGGCGCGACAAGAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCATCGCGTGGTGATCTTCAATGAAGGGCTCTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCGCGAAGGTTTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGAGCGGCGCCGAGAAGTACTCCACCGAGGTCGTGCTCCAGGGCTT
CAACTCGACCCTGACGATGCTCGACGGCCGCGGCGGCGGCGGTGGAGGCGGCAGCTTTGGCGACGAGCCGGGCGGCGATT
TCGGCTCCTCCGGTCCCGTCAGCAGCGCGCCGCGCCGTGCCGTTGCCGCCGGCGGTGGCCGCAACAGCGACATGGACGAC
GATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.724

100

0.549
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.512
  ssb Neisseria meningitidis MC58

38.889

100

0.427
  ssb Neisseria gonorrhoeae MS11

38.889

100

0.427