Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QIH96_RS07375 Genome accession   NZ_CP126005
Coordinates   1587446..1588504 (+) Length   352 a.a.
NCBI ID   WP_038958818.1    Uniprot ID   A0ABV2S7S2
Organism   Bradyrhizobium japonicum strain S04E-Bj     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582446..1593504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH96_RS07355 (QIH96_07350) - 1583371..1585119 (-) 1749 WP_304492797.1 methyl-accepting chemotaxis protein -
  QIH96_RS07360 (QIH96_07355) - 1585323..1586069 (+) 747 WP_028150892.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QIH96_RS07365 (QIH96_07360) ruvC 1586308..1586835 (+) 528 WP_028157463.1 crossover junction endodeoxyribonuclease RuvC -
  QIH96_RS07370 (QIH96_07365) ruvA 1586832..1587449 (+) 618 WP_038936752.1 Holliday junction branch migration protein RuvA -
  QIH96_RS07375 (QIH96_07370) ruvB 1587446..1588504 (+) 1059 WP_038958818.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QIH96_RS07380 (QIH96_07375) - 1588655..1589569 (+) 915 WP_304492798.1 metallophosphoesterase -
  QIH96_RS07385 (QIH96_07380) - 1589639..1589728 (+) 90 Protein_1473 acyl-CoA thioester hydrolase -
  QIH96_RS07390 (QIH96_07385) - 1589701..1591404 (-) 1704 WP_011084356.1 recombinase family protein -
  QIH96_RS07395 (QIH96_07390) - 1591609..1592115 (-) 507 WP_161966264.1 hypothetical protein -
  QIH96_RS07400 (QIH96_07395) - 1592835..1593149 (-) 315 WP_014498135.1 hypothetical protein -
  QIH96_RS07405 (QIH96_07400) - 1593163..1593405 (-) 243 WP_223153765.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38070.27 Da        Isoelectric Point: 5.5148

>NTDB_id=766080 QIH96_RS07375 WP_038958818.1 1587446..1588504(+) (ruvB) [Bradyrhizobium japonicum strain S04E-Bj]
MSDPKANRMVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLGKTTLAQIVAKEL
GVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVG
ATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVTRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADA
ASIDRKIADHALSALEVDAAGLDAMDRRYLTTIAQNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTPRGRL
LTSHAFRHLGIAEPSRDAAAQFGLFGSDESDD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=766080 QIH96_RS07375 WP_038958818.1 1587446..1588504(+) (ruvB) [Bradyrhizobium japonicum strain S04E-Bj]
GTGAGTGACCCCAAGGCCAATCGCATGGTCTCGCCCGAGCGCCGCAGCGACGATGTCGGCGACACCGCGCTGCGCCCGCA
ATCGCTGTCCGACTTCGTCGGCCAGCAGCAGGCGCGCAAGAACCTCTCGATCTTCATCGAGGCGGCGCGCAAGCGTGGCG
AGGCGCTCGATCACGTGCTGTTCGTAGGTCCCCCCGGCCTCGGCAAGACCACGCTGGCGCAGATCGTCGCCAAGGAGCTC
GGCGTCGGCTTTCGCGCCACCTCGGGTCCGGTGATCGCCAAGGCCGGCGATCTCGCCGCACTCCTCACCAACCTCGAAGA
GCGCGACGTGCTCTTCATCGACGAGATCCATCGGCTCAGCCCGGCGGTGGAAGAGGTGCTCTATCCCGCGATGGAGGACT
TTCAGCTCGACCTGATCATCGGCGAGGGCCCGGCGGCGCGCTCGGTGAAGATCGAGCTGTCGAAATTCACGCTCGTCGGC
GCCACCACACGCGCCGGCCTGCTCACCAATCCCTTGCGCGACCGCTTCGGCATCCCGGTCCGCCTCAACTTCTATACGAT
CGAGGAGCTGGAAAGCATCGTCACTCGCGGCGCGCGCGTGCTCAATGTCGGCATGAGTGCCGACGGTGCCAACGAGATCG
CACGCCGCGCCCGCGGCACGCCGCGCATCGCCGGCCGCCTGCTGCGCCGCGTGCGCGATTTCGCCTCCGCCGCCGATGCC
GCCTCGATCGACCGCAAGATCGCCGACCACGCGCTGAGCGCGCTCGAGGTCGACGCCGCCGGCCTCGACGCCATGGACCG
CCGCTACCTCACGACCATCGCGCAGAACTATGGCGGCGGCCCGGTCGGCGTCGAGACGATGGCTGCCGCGCTGTCCGAGC
CGCGCGATGCGATCGAGGACATCATCGAGCCTTATCTGATTCAGTGCGGCTATCTCCAGCGTACCCCGCGCGGCCGCCTG
CTCACCTCGCACGCCTTCCGCCATCTCGGCATCGCCGAGCCCTCGCGCGATGCCGCGGCACAGTTCGGCCTGTTCGGCTC
GGACGAGAGCGACGACTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)

RuvB C-terminal winged helix domain (WHD_RuvB)

(260-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.024

94.318

0.528
  ruvB Streptococcus pneumoniae TIGR4

53.231

92.33

0.491
  ruvB Streptococcus pneumoniae R6

54.14

89.205

0.483
  ruvB Streptococcus pneumoniae D39

54.14

89.205

0.483
  ruvB Helicobacter pylori 26695

54.662

88.352

0.483
  ruvB Synechocystis sp. PCC 6803

50.152

93.466

0.469