Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O3S71_RS26125 Genome accession   NZ_CP114406
Coordinates   5030183..5030704 (+) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tenebrionis strain NB-176     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5025183..5035704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S71_RS26095 spo0J 5025628..5026479 (+) 852 WP_001051833.1 stage 0 sporulation protein Spo0J -
  O3S71_RS26100 yyaC 5026500..5027096 (-) 597 WP_001020711.1 spore protease YyaC -
  O3S71_RS26105 - 5027356..5028237 (+) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  O3S71_RS26110 - 5028261..5028458 (+) 198 WP_000435486.1 DUF951 domain-containing protein -
  O3S71_RS26115 ychF 5028574..5029674 (+) 1101 WP_000524658.1 redox-regulated ATPase YchF -
  O3S71_RS26120 rpsF 5029866..5030156 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  O3S71_RS26125 ssbA 5030183..5030704 (+) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  O3S71_RS26130 rpsR 5030750..5030983 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  O3S71_RS26135 - 5031064..5031999 (+) 936 WP_044798204.1 YybS family protein -
  O3S71_RS26140 - 5032078..5034051 (+) 1974 WP_001113785.1 DHH family phosphoesterase -
  O3S71_RS26145 rplI 5034048..5034494 (+) 447 WP_000864237.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=765955 O3S71_RS26125 WP_000981963.1 5030183..5030704(+) (ssbA) [Bacillus thuringiensis serovar tenebrionis strain NB-176]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=765955 O3S71_RS26125 WP_000981963.1 5030183..5030704(+) (ssbA) [Bacillus thuringiensis serovar tenebrionis strain NB-176]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTGTATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382