Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O3S70_RS26980 Genome accession   NZ_CP114399
Coordinates   5208551..5209072 (+) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tenebrionis strain NB176-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5203551..5214072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S70_RS26950 spo0J 5203996..5204847 (+) 852 WP_001051833.1 stage 0 sporulation protein Spo0J -
  O3S70_RS26955 yyaC 5204868..5205464 (-) 597 WP_001020711.1 spore protease YyaC -
  O3S70_RS26960 - 5205724..5206605 (+) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  O3S70_RS26965 - 5206629..5206826 (+) 198 WP_000435486.1 DUF951 domain-containing protein -
  O3S70_RS26970 ychF 5206942..5208042 (+) 1101 WP_000524658.1 redox-regulated ATPase YchF -
  O3S70_RS26975 rpsF 5208234..5208524 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  O3S70_RS26980 ssbA 5208551..5209072 (+) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  O3S70_RS26985 rpsR 5209118..5209351 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  O3S70_RS26990 - 5209432..5210367 (+) 936 WP_044798204.1 YybS family protein -
  O3S70_RS26995 - 5210446..5212419 (+) 1974 WP_001113785.1 DHH family phosphoesterase -
  O3S70_RS27000 rplI 5212416..5212862 (+) 447 WP_000864237.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=765908 O3S70_RS26980 WP_000981963.1 5208551..5209072(+) (ssbA) [Bacillus thuringiensis serovar tenebrionis strain NB176-1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=765908 O3S70_RS26980 WP_000981963.1 5208551..5209072(+) (ssbA) [Bacillus thuringiensis serovar tenebrionis strain NB176-1]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTGTATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382