Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZ656_RS03595 Genome accession   NZ_CP114373
Coordinates   766537..767061 (+) Length   174 a.a.
NCBI ID   WP_273030136.1    Uniprot ID   -
Organism   Marinobacter sp. LM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 761537..772061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ656_RS03580 (OZ656_03570) rplQ 761654..762049 (+) 396 WP_023007570.1 50S ribosomal protein L17 -
  OZ656_RS03585 (OZ656_03575) uvrA 762122..764944 (-) 2823 WP_379944956.1 excinuclease ABC subunit UvrA -
  OZ656_RS03590 (OZ656_03580) - 765109..766479 (+) 1371 WP_023007572.1 MFS transporter -
  OZ656_RS03595 (OZ656_03585) ssb 766537..767061 (+) 525 WP_273030136.1 single-stranded DNA-binding protein Machinery gene
  OZ656_RS03600 - 767113..767178 (+) 66 WP_379945199.1 DUF6701 domain-containing protein -
  OZ656_RS03605 (OZ656_03590) ntrC 767194..768627 (-) 1434 WP_273030134.1 nitrogen regulation protein NR(I) -
  OZ656_RS03610 (OZ656_03595) glnL 768624..769724 (-) 1101 WP_286895090.1 nitrogen regulation protein NR(II) -
  OZ656_RS03615 (OZ656_03600) - 769968..770492 (-) 525 WP_273030132.1 DUF4124 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19104.19 Da        Isoelectric Point: 4.9464

>NTDB_id=765693 OZ656_RS03595 WP_273030136.1 766537..767061(+) (ssb) [Marinobacter sp. LM1]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGSEGGMNPGAPQGRPQQQPQYNAPPQQGGQAGGYNNPSPQQQGGG
MPEPIDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=765693 OZ656_RS03595 WP_273030136.1 766537..767061(+) (ssb) [Marinobacter sp. LM1]
ATGGCACGAGGCGTAAACAAGGTAATTCTCATTGGTAACCTGGGGCAGGACCCGGACACTCGCTATACCCCCAACGGCAA
CGCTGTGGTTAACCTGAACCTCGCCACAGACGAGAGTTACAAGGATCGCCAGACCGGACAGATGGTGCCGAAGACCGAGT
GGCATCGGGTTGTGCTGTTCGGCAAGGTGGCTGAAGTGGCTGGGCAATACCTGCGCAAAGGCTCCAAGGTCTACATTGAA
GGCAAGCTGCAGACCCGGAAATGGCAGAACAAGGAAGGGCAAGATGTCTACACCACCGAAGTGGTTGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGGGGCTCTGAGGGCGGTATGAATCCGGGGGCTCCCCAGGGACGGCCGCAGCAGCAGC
CGCAATACAATGCGCCGCCCCAGCAGGGTGGGCAGGCTGGTGGCTACAACAACCCGTCACCCCAGCAGCAGGGTGGTGGC
ATGCCTGAGCCGATTGATGATTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.143

100

0.575
  ssb Glaesserella parasuis strain SC1401

53.514

100

0.569
  ssb Neisseria meningitidis MC58

44.444

100

0.46
  ssb Neisseria gonorrhoeae MS11

44.444

100

0.46