Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QM974_RS05130 Genome accession   NZ_CP125966
Coordinates   1081224..1082234 (+) Length   336 a.a.
NCBI ID   WP_000664516.1    Uniprot ID   -
Organism   Helicobacter pylori strain H390r     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1076224..1087234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM974_RS05105 (QM974_05105) - 1076411..1077733 (-) 1323 WP_271330461.1 M23 family metallopeptidase -
  QM974_RS05110 (QM974_05110) - 1077743..1078687 (-) 945 WP_271330462.1 outer membrane beta-barrel protein -
  QM974_RS05115 (QM974_05115) - 1078696..1079550 (-) 855 WP_271330463.1 outer membrane beta-barrel protein -
  QM974_RS05120 (QM974_05120) - 1079540..1080262 (-) 723 WP_271330464.1 hypothetical protein -
  QM974_RS05125 (QM974_05125) panB 1080411..1081223 (+) 813 WP_121048724.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QM974_RS05130 (QM974_05130) ruvB 1081224..1082234 (+) 1011 WP_000664516.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QM974_RS05135 (QM974_05135) tatB 1082302..1082778 (+) 477 WP_096424746.1 Sec-independent protein translocase protein TatB -
  QM974_RS05140 (QM974_05140) tatC 1082771..1083532 (+) 762 WP_000461177.1 twin-arginine translocase subunit TatC -
  QM974_RS05145 (QM974_05145) queA 1083533..1084570 (+) 1038 WP_271330465.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QM974_RS05150 (QM974_05150) rsmG 1084567..1085103 (+) 537 WP_271330466.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QM974_RS05155 (QM974_05155) - 1085097..1085339 (+) 243 WP_162965247.1 PP0621 family protein -
  QM974_RS05160 (QM974_05160) - 1085342..1085749 (+) 408 WP_271330467.1 hypothetical protein -
  QM974_RS05170 (QM974_05170) - 1085881..1086483 (-) 603 WP_000291635.1 outer membrane protein -
  QM974_RS05175 (QM974_05175) - 1086774..1087148 (+) 375 WP_000772153.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37307.27 Da        Isoelectric Point: 6.0715

>NTDB_id=765455 QM974_RS05130 WP_000664516.1 1081224..1082234(+) (ruvB) [Helicobacter pylori strain H390r]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=765455 QM974_RS05130 WP_000664516.1 1081224..1082234(+) (ruvB) [Helicobacter pylori strain H390r]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTAGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCTATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAATACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCCAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.87

96.131

0.518
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482