Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CF557_RS10995 Genome accession   NZ_CP114281
Coordinates   2325249..2325761 (+) Length   170 a.a.
NCBI ID   WP_094872039.1    Uniprot ID   -
Organism   Gallibacterium anatis strain ESV200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2320249..2330761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF557_RS10985 (CF557_10985) - 2321174..2321758 (-) 585 WP_021462093.1 hypothetical protein -
  CF557_RS10990 (CF557_10990) uvrA 2322273..2325107 (-) 2835 WP_039162088.1 excinuclease ABC subunit UvrA -
  CF557_RS10995 (CF557_10995) ssb 2325249..2325761 (+) 513 WP_094872039.1 single-stranded DNA-binding protein Machinery gene
  CF557_RS11000 (CF557_11000) - 2325858..2326745 (-) 888 WP_094872037.1 LysR family transcriptional regulator -
  CF557_RS11005 (CF557_11005) - 2326861..2327703 (+) 843 WP_094872034.1 aldo/keto reductase -
  CF557_RS11010 (CF557_11010) - 2327740..2327886 (-) 147 WP_256963518.1 efflux RND transporter permease subunit -
  CF557_RS11015 (CF557_11015) - 2327870..2328154 (-) 285 WP_256963517.1 hypothetical protein -
  CF557_RS11020 (CF557_11020) - 2328121..2328387 (-) 267 WP_143403346.1 hypothetical protein -
  CF557_RS11025 (CF557_11025) - 2328387..2328554 (-) 168 WP_179256209.1 hypothetical protein -
  CF557_RS11030 (CF557_11030) - 2328698..2329813 (+) 1116 WP_094872032.1 AAA family ATPase -
  CF557_RS11035 (CF557_11035) - 2329810..2330604 (+) 795 WP_094872029.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19087.21 Da        Isoelectric Point: 4.9833

>NTDB_id=765365 CF557_RS10995 WP_094872039.1 2325249..2325761(+) (ssb) [Gallibacterium anatis strain ESV200]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYVEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPMAQPQNQFAQPSYNQPAQPNQFAQPAAAKAPQAAVNPD
TADFDDDMPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=765365 CF557_RS10995 WP_094872039.1 2325249..2325761(+) (ssb) [Gallibacterium anatis strain ESV200]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTGAGAACCTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGCTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGTATCGTGTTATTCCGCCGTTTGGCAGAAATTGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATGTAGAAGGC
AAATTGCGTACGCGTAAGTGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCGGCACCAATGGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAGCCGGCACAACCTAACCAATTTGCACAACCGGCAGCCGCCAAAGCACCGCAAGCAGCGGTAAATCCGGAT
ACAGCGGATTTTGATGATGATATGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.736

100

0.682
  ssb Vibrio cholerae strain A1552

52.273

100

0.541
  ssb Neisseria meningitidis MC58

43.82

100

0.459
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.453