Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CF557_RS10430 Genome accession   NZ_CP114281
Coordinates   2200837..2201322 (-) Length   161 a.a.
NCBI ID   WP_039085589.1    Uniprot ID   -
Organism   Gallibacterium anatis strain ESV200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2195837..2206322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF557_RS10410 (CF557_10410) - 2196311..2196694 (-) 384 WP_414736160.1 DUF3577 domain-containing protein -
  CF557_RS10415 (CF557_10415) - 2197509..2199539 (-) 2031 WP_021462518.1 DNA topoisomerase III -
  CF557_RS10420 (CF557_10420) - 2199658..2199954 (-) 297 WP_021462517.1 hypothetical protein -
  CF557_RS10425 (CF557_10425) - 2200047..2200742 (+) 696 WP_039085587.1 hypothetical protein -
  CF557_RS10430 (CF557_10430) ssb 2200837..2201322 (-) 486 WP_039085589.1 single-stranded DNA-binding protein Machinery gene
  CF557_RS10435 (CF557_10435) - 2201607..2202113 (-) 507 WP_080735141.1 DUF3158 family protein -
  CF557_RS10440 (CF557_10440) - 2202154..2202909 (-) 756 WP_039085591.1 PFL_4669 family integrating conjugative element protein -
  CF557_RS10445 (CF557_10445) - 2203194..2204417 (-) 1224 WP_039139129.1 STY4528 family pathogenicity island replication protein -
  CF557_RS10450 (CF557_10450) - 2204575..2205126 (-) 552 WP_039139132.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18186.17 Da        Isoelectric Point: 6.4841

>NTDB_id=765362 CF557_RS10430 WP_039085589.1 2200837..2201322(-) (ssb) [Gallibacterium anatis strain ESV200]
MAGINKVIIVGNLGAEPEVRAMPNGEAVANISVATSESWIDKNTGEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIHGDVLQMLDSRPTSQVGAAQRVRNQYAQQSQPAYQTPQTQTVSTQSTSLPDDSFGDNEIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=765362 CF557_RS10430 WP_039085589.1 2200837..2201322(-) (ssb) [Gallibacterium anatis strain ESV200]
ATGGCAGGTATCAATAAAGTTATTATCGTGGGGAATCTTGGTGCAGAACCTGAAGTAAGAGCAATGCCGAATGGTGAGGC
AGTAGCCAATATTAGTGTTGCAACCAGTGAAAGTTGGATAGATAAGAATACAGGTGAAAAACGTGAATTAACCGAATGGC
ATCGTATTGTTTTTTATCGTCGTCAAGCTGAGATTGTGGGGGAATATTTACGCAAAGGTTCGAAAGTCTATGTGGAAGGG
CGTTTAAGAACCCGTAAATGGCAAGACCAAAATGGTCAAGATCGATACACCACAGAAATTCACGGCGATGTACTTCAAAT
GCTAGATAGCCGTCCTACATCTCAAGTTGGAGCGGCACAACGAGTTCGTAATCAATATGCTCAACAGAGCCAACCAGCCT
ATCAAACACCACAAACCCAAACTGTAAGTACCCAATCTACATCTTTACCTGATGATAGTTTTGGTGATAATGAAATCCCA
TTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

80.531

70.186

0.565
  ssb Vibrio cholerae strain A1552

50.286

100

0.547
  ssb Neisseria meningitidis MC58

47.368

94.41

0.447
  ssb Neisseria gonorrhoeae MS11

50

85.714

0.429