Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CF557_RS08480 Genome accession   NZ_CP114281
Coordinates   1802581..1802910 (+) Length   109 a.a.
NCBI ID   WP_094872213.1    Uniprot ID   -
Organism   Gallibacterium anatis strain ESV200     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1797581..1807910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF557_RS08465 (CF557_08465) galU 1798460..1799347 (+) 888 WP_094872218.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CF557_RS08470 (CF557_08470) glpT 1799694..1801151 (+) 1458 WP_039086543.1 glycerol-3-phosphate transporter -
  CF557_RS08475 (CF557_08475) glpQ 1801291..1802385 (+) 1095 WP_094872215.1 glycerophosphodiester phosphodiesterase -
  CF557_RS08480 (CF557_08480) comEA/comE1 1802581..1802910 (+) 330 WP_094872213.1 ComEA family DNA-binding protein Machinery gene
  CF557_RS08485 (CF557_08485) fis 1802992..1803288 (-) 297 WP_013746362.1 DNA-binding transcriptional regulator Fis -
  CF557_RS08490 (CF557_08490) dusB 1803317..1804291 (-) 975 WP_094872210.1 tRNA dihydrouridine synthase DusB -
  CF557_RS08495 (CF557_08495) - 1804618..1807659 (+) 3042 WP_094872208.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11539.17 Da        Isoelectric Point: 6.7250

>NTDB_id=765357 CF557_RS08480 WP_094872213.1 1802581..1802910(+) (comEA/comE1) [Gallibacterium anatis strain ESV200]
MKLKHLFALTFGSLALLSGSVAVAESANPPPATETAQLQQAAQSDKVNLNTATAEQLQKGLVGIGAKKAQAIVEYREQHG
PFVSVEQITEVKGIGSAIFEKNKDHLAIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=765357 CF557_RS08480 WP_094872213.1 1802581..1802910(+) (comEA/comE1) [Gallibacterium anatis strain ESV200]
ATGAAATTAAAACATTTATTTGCGTTAACTTTCGGTTCACTAGCACTGTTGTCCGGTTCGGTTGCGGTAGCGGAAAGCGC
CAATCCGCCGCCGGCAACTGAAACGGCACAACTCCAACAGGCGGCACAGAGCGATAAAGTGAATTTAAATACTGCCACTG
CTGAACAGCTACAGAAAGGATTGGTCGGCATTGGTGCGAAAAAGGCACAGGCGATTGTCGAGTATCGTGAGCAGCACGGG
CCGTTTGTTTCTGTGGAACAGATTACCGAAGTAAAAGGAATCGGTTCAGCTATTTTTGAAAAAAATAAAGATCATCTAGC
GATTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.649

100

0.495
  comE1/comEA Haemophilus influenzae Rd KW20

47.273

100

0.477
  comEA Acinetobacter baylyi ADP1

38.76

100

0.459
  comEA Bacillus subtilis subsp. subtilis str. 168

45.556

82.569

0.376