Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O1449_RS14675 Genome accession   NZ_CP114264
Coordinates   3055681..3056265 (-) Length   194 a.a.
NCBI ID   WP_269238680.1    Uniprot ID   A0A9E9L2W9
Organism   Acinetobacter sp. TR3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3050681..3061265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS14660 (O1449_14675) gabT 3050741..3052033 (-) 1293 WP_269238679.1 4-aminobutyrate--2-oxoglutarate transaminase -
  O1449_RS14665 (O1449_14680) - 3052188..3053687 (+) 1500 WP_269229379.1 PLP-dependent aminotransferase family protein -
  O1449_RS14670 (O1449_14685) - 3053758..3055200 (-) 1443 WP_269229378.1 amino acid permease -
  O1449_RS14675 (O1449_14690) ssb 3055681..3056265 (-) 585 WP_269238680.1 single-stranded DNA-binding protein Machinery gene
  O1449_RS14680 (O1449_14695) - 3056317..3057681 (-) 1365 WP_034602552.1 MFS transporter -
  O1449_RS14685 (O1449_14700) - 3057833..3058915 (-) 1083 WP_269229377.1 DUF475 domain-containing protein -
  O1449_RS14690 (O1449_14705) tenA 3059090..3059764 (+) 675 WP_269238681.1 thiaminase II -
  O1449_RS14695 (O1449_14710) - 3059920..3060273 (-) 354 WP_269229375.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21337.06 Da        Isoelectric Point: 6.4819

>NTDB_id=765316 O1449_RS14675 WP_269238680.1 3055681..3056265(-) (ssb) [Acinetobacter sp. TR3]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDTRQQSEQGGGDFNQPRFNNNNNQGGGYQNTGYNNNQNGYGQGGGFAGGNQG
NYAGSPQAGNGFNTPKSAPQPVTAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=765316 O1449_RS14675 WP_269238680.1 3055681..3056265(-) (ssb) [Acinetobacter sp. TR3]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTGGGTAAAGATCCTGAAACCAAAACTTTTCCAAATGGTGGATC
CCTGACTCAATTTTCGATTGCAACAAGTGAGTCTTGGACAGATAAGAATACAGGCGAGCGTAAAGAACAAACAGAATGGC
ATCGTATTGTGTTACACAACCGTTTAGGCGAAATTGCACAGCAATATTTGCGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCATTACGTACTCGTCAATGGACAGATCAAAACGGTCAAGAGCGTTACAGTACTGAAATTCGTGGCGATCAAATGCAAAT
GTTAGATACGCGTCAACAAAGCGAACAAGGCGGCGGTGACTTTAATCAACCACGTTTTAATAACAACAATAACCAAGGTG
GTGGTTACCAAAATACGGGTTATAACAACAACCAAAATGGTTATGGTCAGGGCGGAGGTTTTGCTGGCGGTAATCAAGGT
AATTATGCTGGTAGTCCACAAGCAGGAAATGGTTTTAATACACCAAAATCAGCACCTCAGCCTGTGACTGCTCCTGCTGA
TTTAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.724

100

0.541
  ssb Vibrio cholerae strain A1552

45.729

100

0.469
  ssb Neisseria meningitidis MC58

38.542

98.969

0.381
  ssb Neisseria gonorrhoeae MS11

38.542

98.969

0.381