Detailed information NTG0076531

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: LPC25_RS08330
• Genome accession: NZ_AP025176
• Coordinates: 1719116..1719718 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271551.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TPS5614
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1714116..1724718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPC25_RS08310 (TPS5614TP_15940)	yajC	1715612..1715872 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
LPC25_RS08315 (TPS5614TP_15950)	tgt	1715891..1717030 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
LPC25_RS08320 (TPS5614TP_15960)	queA	1717053..1718078 (-)	1026	WP_001008435.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LPC25_RS08325 (TPS5614TP_15970)	ruvB	1718080..1719084 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LPC25_RS08330 (TPS5614TP_15980)	ruvA	1719116..1719718 (-)	603	WP_000271551.1	Holliday junction branch migration protein RuvA	Machinery gene
LPC25_RS08335 (TPS5614TP_15990)	-	1719732..1720187 (-)	456	WP_000368899.1	ACT domain-containing protein	-
LPC25_RS08340 (TPS5614TP_16000)	obgE	1720200..1721492 (-)	1293	WP_000496100.1	GTPase ObgE	-
LPC25_RS08345 (TPS5614TP_16010)	rpmA	1721712..1721996 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
LPC25_RS08350 (TPS5614TP_16020)	-	1722008..1722328 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
LPC25_RS08355 (TPS5614TP_16030)	rplU	1722334..1722642 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
LPC25_RS08360 (TPS5614TP_16040)	mreD	1722878..1723408 (-)	531	WP_001259930.1	rod shape-determining protein MreD	-
LPC25_RS08365 (TPS5614TP_16050)	mreC	1723408..1724250 (-)	843	WP_000911038.1	rod shape-determining protein MreC	-
LPC25_RS08370	-	1724450..1724569 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22253.45 Da
• Isoelectric Point: 5.7132

>NTDB_id=76531 LPC25_RS08330 WP_000271551.1 1719116..1719718(-) (ruvA) [Staphylococcus aureus strain TPS5614]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=76531 LPC25_RS08330 WP_000271551.1 1719116..1719718(-) (ruvA) [Staphylococcus aureus strain TPS5614]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (156-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.734	99.5	0.465
ruvA	Streptococcus pneumoniae R6	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae D39	46.231	99.5	0.46
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425