Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | O1449_RS12435 | Genome accession | NZ_CP114264 |
| Coordinates | 2618463..2618816 (+) | Length | 117 a.a. |
| NCBI ID | WP_269228766.1 | Uniprot ID | A0A9E9L3F1 |
| Organism | Acinetobacter sp. TR3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2586748..2621167 | 2618463..2618816 | within | 0 |
Gene organization within MGE regions
Location: 2586748..2621167
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O1449_RS12215 (O1449_12230) | - | 2586748..2587821 (-) | 1074 | WP_269228721.1 | phage portal protein | - |
| O1449_RS12220 (O1449_12235) | - | 2587818..2589581 (-) | 1764 | WP_269238470.1 | terminase family protein | - |
| O1449_RS12225 (O1449_12240) | - | 2589779..2590693 (+) | 915 | WP_269228723.1 | GPO family capsid scaffolding protein | - |
| O1449_RS12230 (O1449_12245) | - | 2590749..2591786 (+) | 1038 | WP_269228724.1 | phage major capsid protein, P2 family | - |
| O1449_RS12235 (O1449_12250) | gpM | 2591786..2592697 (+) | 912 | WP_269228725.1 | phage terminase small subunit | - |
| O1449_RS12240 (O1449_12255) | - | 2592705..2593115 (+) | 411 | WP_269228726.1 | head completion/stabilization protein | - |
| O1449_RS12245 (O1449_12260) | - | 2593112..2593318 (+) | 207 | WP_269228727.1 | tail protein X | - |
| O1449_RS12250 (O1449_12265) | - | 2593333..2593668 (+) | 336 | WP_269228728.1 | phage holin family protein | - |
| O1449_RS12255 (O1449_12270) | - | 2593665..2594210 (+) | 546 | WP_269228729.1 | N-acetylmuramidase | - |
| O1449_RS12260 (O1449_12275) | - | 2594222..2594608 (+) | 387 | WP_269228730.1 | phage tail protein | - |
| O1449_RS12265 (O1449_12280) | - | 2594605..2595042 (+) | 438 | WP_269228731.1 | phage virion morphogenesis protein | - |
| O1449_RS12270 (O1449_12285) | - | 2595199..2596035 (+) | 837 | WP_269228732.1 | DNA adenine methylase | - |
| O1449_RS12275 (O1449_12290) | - | 2596128..2596643 (+) | 516 | WP_269228733.1 | phage baseplate assembly protein V | - |
| O1449_RS12280 (O1449_12295) | - | 2596640..2597005 (+) | 366 | WP_269228734.1 | GPW/gp25 family protein | - |
| O1449_RS12285 (O1449_12300) | - | 2597002..2597901 (+) | 900 | WP_269228735.1 | baseplate J/gp47 family protein | - |
| O1449_RS12290 (O1449_12305) | - | 2597894..2598418 (+) | 525 | WP_269228736.1 | phage tail protein I | - |
| O1449_RS12295 (O1449_12310) | - | 2598437..2599408 (+) | 972 | WP_269228737.1 | hypothetical protein | - |
| O1449_RS12300 (O1449_12315) | - | 2599409..2600941 (+) | 1533 | WP_269228738.1 | phage tail protein | - |
| O1449_RS12305 (O1449_12320) | - | 2600971..2601600 (+) | 630 | WP_269228739.1 | hypothetical protein | - |
| O1449_RS12310 (O1449_12325) | - | 2601609..2602649 (+) | 1041 | WP_269228740.1 | LamG-like jellyroll fold domain-containing protein | - |
| O1449_RS12315 (O1449_12330) | - | 2602677..2603321 (+) | 645 | WP_269228741.1 | phage tail sheath C-terminal domain-containing protein | - |
| O1449_RS12320 (O1449_12335) | - | 2603322..2603828 (+) | 507 | WP_269228742.1 | phage major tail tube protein | - |
| O1449_RS12325 (O1449_12340) | - | 2603873..2604214 (+) | 342 | WP_269228743.1 | phage tail assembly protein | - |
| O1449_RS12330 (O1449_12345) | - | 2604214..2604333 (+) | 120 | WP_269239714.1 | GpE family phage tail protein | - |
| O1449_RS12335 (O1449_12350) | - | 2604342..2607017 (+) | 2676 | WP_269228745.1 | phage tail tape measure protein | - |
| O1449_RS12340 (O1449_12355) | - | 2607028..2607414 (+) | 387 | WP_269228746.1 | phage tail protein | - |
| O1449_RS12345 (O1449_12360) | - | 2607411..2608421 (+) | 1011 | WP_269228747.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| O1449_RS12350 (O1449_12365) | - | 2608418..2608585 (-) | 168 | WP_269228748.1 | hypothetical protein | - |
| O1449_RS12355 (O1449_12370) | - | 2608644..2608823 (-) | 180 | WP_269228749.1 | hypothetical protein | - |
| O1449_RS12360 (O1449_12375) | - | 2608973..2609266 (-) | 294 | WP_269228750.1 | hypothetical protein | - |
| O1449_RS12365 (O1449_12380) | - | 2609417..2609716 (-) | 300 | WP_269228751.1 | hypothetical protein | - |
| O1449_RS12370 (O1449_12385) | - | 2610150..2610344 (+) | 195 | WP_269228752.1 | hypothetical protein | - |
| O1449_RS12375 (O1449_12390) | - | 2610551..2611102 (-) | 552 | WP_269228753.1 | hypothetical protein | - |
| O1449_RS12380 (O1449_12395) | - | 2611448..2611633 (+) | 186 | WP_269228754.1 | hypothetical protein | - |
| O1449_RS12385 (O1449_12400) | - | 2611644..2612339 (+) | 696 | WP_269228755.1 | hypothetical protein | - |
| O1449_RS12390 (O1449_12405) | - | 2612336..2612668 (+) | 333 | WP_269228756.1 | hypothetical protein | - |
| O1449_RS12395 (O1449_12410) | - | 2612823..2613176 (-) | 354 | WP_269228758.1 | helix-turn-helix transcriptional regulator | - |
| O1449_RS12400 (O1449_12415) | - | 2613313..2613504 (+) | 192 | WP_269228759.1 | hypothetical protein | - |
| O1449_RS12405 (O1449_12420) | - | 2613776..2614183 (+) | 408 | WP_269228760.1 | ogr/Delta-like zinc finger family protein | - |
| O1449_RS12410 (O1449_12425) | - | 2614180..2616906 (+) | 2727 | WP_269228761.1 | toprim domain-containing protein | - |
| O1449_RS12415 (O1449_12430) | - | 2616915..2617130 (+) | 216 | WP_269228762.1 | hypothetical protein | - |
| O1449_RS12420 (O1449_12435) | - | 2617196..2617627 (+) | 432 | WP_269228763.1 | DUF2528 family protein | - |
| O1449_RS12425 (O1449_12440) | - | 2617631..2618071 (+) | 441 | WP_269228764.1 | hypothetical protein | - |
| O1449_RS12430 (O1449_12445) | - | 2618068..2618466 (+) | 399 | WP_269228765.1 | hypothetical protein | - |
| O1449_RS12435 (O1449_12450) | ssb | 2618463..2618816 (+) | 354 | WP_269228766.1 | single-stranded DNA-binding protein | Machinery gene |
| O1449_RS12440 (O1449_12455) | - | 2619032..2619742 (+) | 711 | WP_269228767.1 | 3'-5' exonuclease | - |
| O1449_RS12445 (O1449_12460) | - | 2619739..2620029 (+) | 291 | WP_269228768.1 | hypothetical protein | - |
| O1449_RS12450 (O1449_12465) | - | 2620058..2621116 (-) | 1059 | WP_269228769.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13177.84 Da Isoelectric Point: 9.8874
>NTDB_id=765301 O1449_RS12435 WP_269228766.1 2618463..2618816(+) (ssb) [Acinetobacter sp. TR3]
MRGVNKVILVGSLGADPQKKGFPNGGSYAQFSIATSESWQDKQTGEWKENTEWHRIVANGRLGDIAAQYLKKGSKVYVEG
SLRTRLWKDQNNVERYITEVKLNSMQMLDSAPQANPY
MRGVNKVILVGSLGADPQKKGFPNGGSYAQFSIATSESWQDKQTGEWKENTEWHRIVANGRLGDIAAQYLKKGSKVYVEG
SLRTRLWKDQNNVERYITEVKLNSMQMLDSAPQANPY
Nucleotide
Download Length: 354 bp
>NTDB_id=765301 O1449_RS12435 WP_269228766.1 2618463..2618816(+) (ssb) [Acinetobacter sp. TR3]
ATGAGAGGCGTAAATAAAGTTATTTTAGTCGGTTCTCTTGGTGCAGATCCGCAGAAAAAAGGTTTTCCAAATGGCGGATC
ATATGCCCAATTTTCAATAGCAACATCTGAAAGTTGGCAAGATAAGCAAACTGGGGAATGGAAAGAAAATACAGAATGGC
ATCGCATTGTTGCCAACGGGAGATTGGGCGATATCGCTGCACAATATCTAAAAAAAGGTTCAAAAGTTTATGTCGAGGGT
TCTCTCCGAACACGATTGTGGAAAGACCAGAATAATGTTGAACGCTATATCACTGAAGTGAAGCTCAACAGCATGCAGAT
GCTCGACTCAGCCCCACAAGCAAACCCATATTAA
ATGAGAGGCGTAAATAAAGTTATTTTAGTCGGTTCTCTTGGTGCAGATCCGCAGAAAAAAGGTTTTCCAAATGGCGGATC
ATATGCCCAATTTTCAATAGCAACATCTGAAAGTTGGCAAGATAAGCAAACTGGGGAATGGAAAGAAAATACAGAATGGC
ATCGCATTGTTGCCAACGGGAGATTGGGCGATATCGCTGCACAATATCTAAAAAAAGGTTCAAAAGTTTATGTCGAGGGT
TCTCTCCGAACACGATTGTGGAAAGACCAGAATAATGTTGAACGCTATATCACTGAAGTGAAGCTCAACAGCATGCAGAT
GCTCGACTCAGCCCCACAAGCAAACCCATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
60.909 |
94.017 |
0.573 |
| ssb | Vibrio cholerae strain A1552 |
55.856 |
94.872 |
0.53 |
| ssb | Neisseria gonorrhoeae MS11 |
45.714 |
89.744 |
0.41 |
| ssb | Neisseria meningitidis MC58 |
45.714 |
89.744 |
0.41 |