Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OYT07_RS14295 Genome accession   NZ_CP114254
Coordinates   2835869..2836405 (-) Length   178 a.a.
NCBI ID   WP_003721668.1    Uniprot ID   A0A0E0USV6
Organism   Listeria monocytogenes strain LM34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2830869..2841405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT07_RS14265 (OYT07_02845) - 2831668..2832396 (-) 729 WP_003721674.1 LytR/AlgR family response regulator transcription factor -
  OYT07_RS14270 (OYT07_02846) - 2832415..2833710 (-) 1296 WP_039386086.1 sensor histidine kinase -
  OYT07_RS14275 (OYT07_02847) - 2833806..2833967 (-) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  OYT07_RS14280 (OYT07_02848) - 2833951..2834565 (-) 615 WP_003727551.1 accessory gene regulator ArgB-like protein -
  OYT07_RS14285 (OYT07_02849) - 2834821..2835432 (-) 612 WP_003721670.1 PepSY domain-containing protein -
  OYT07_RS14290 (OYT07_02850) rpsR 2835586..2835825 (-) 240 WP_003721669.1 30S ribosomal protein S18 -
  OYT07_RS14295 (OYT07_02851) ssbA 2835869..2836405 (-) 537 WP_003721668.1 single-stranded DNA-binding protein Machinery gene
  OYT07_RS14300 (OYT07_02852) rpsF 2836461..2836754 (-) 294 WP_003721667.1 30S ribosomal protein S6 -
  OYT07_RS14305 (OYT07_02853) arcA 2837033..2838265 (-) 1233 WP_003732187.1 arginine deiminase -
  OYT07_RS14310 (OYT07_02854) - 2838345..2839004 (-) 660 WP_003721665.1 DedA family protein -
  OYT07_RS14315 (OYT07_02855) - 2839109..2839888 (-) 780 WP_003721664.1 MurR/RpiR family transcriptional regulator -
  OYT07_RS14320 (OYT07_02856) aguA 2839905..2841014 (-) 1110 WP_003732185.1 agmatine deiminase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19493.14 Da        Isoelectric Point: 4.7306

>NTDB_id=765195 OYT07_RS14295 WP_003721668.1 2835869..2836405(-) (ssbA) [Listeria monocytogenes strain LM34]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=765195 OYT07_RS14295 WP_003721668.1 2835869..2836405(-) (ssbA) [Listeria monocytogenes strain LM34]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCGGGCGTTGATGGCCGTGTTCAAACTCGT
AATTACGAGGGAAACGACGGTAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTACAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAATAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.539

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.551

0.365