Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O1V13_RS28975 Genome accession   NZ_CP114201
Coordinates   6383421..6383987 (+) Length   188 a.a.
NCBI ID   WP_269197732.1    Uniprot ID   -
Organism   Delftia acidovorans strain BIM B-1761     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6378421..6388987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1V13_RS28965 (O1V13_28975) uvrA 6378698..6381811 (-) 3114 WP_269197731.1 excinuclease ABC subunit UvrA -
  O1V13_RS28970 (O1V13_28980) - 6382085..6383260 (+) 1176 WP_043796511.1 MFS transporter -
  O1V13_RS28975 (O1V13_28985) ssb 6383421..6383987 (+) 567 WP_269197732.1 single-stranded DNA-binding protein Machinery gene
  O1V13_RS28980 (O1V13_28990) - 6384074..6384571 (+) 498 WP_269197733.1 hypothetical protein -
  O1V13_RS28985 (O1V13_28995) - 6384627..6384773 (+) 147 WP_170962098.1 hypothetical protein -
  O1V13_RS28990 (O1V13_29000) - 6384895..6386349 (+) 1455 WP_269197734.1 SulP family inorganic anion transporter -
  O1V13_RS28995 (O1V13_29005) paaE 6386380..6387477 (-) 1098 WP_269197735.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -
  O1V13_RS29000 (O1V13_29010) paaD 6387474..6388043 (-) 570 WP_097204198.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD -
  O1V13_RS29005 (O1V13_29015) paaC 6388043..6388825 (-) 783 WP_269197736.1 1,2-phenylacetyl-CoA epoxidase subunit PaaC -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20405.52 Da        Isoelectric Point: 5.9554

>NTDB_id=765027 O1V13_RS28975 WP_269197732.1 6383421..6383987(+) (ssb) [Delftia acidovorans strain BIM B-1761]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPP
QRSAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=765027 O1V13_RS28975 WP_269197732.1 6383421..6383987(+) (ssb) [Delftia acidovorans strain BIM B-1761]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTACGGTGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTCCC
CAGCGCTCCGCTCCCGCACCCATGGCACCCCCGCCCCAGCGCGCAGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.846

100

0.559
  ssb Glaesserella parasuis strain SC1401

52.577

100

0.543
  ssb Neisseria gonorrhoeae MS11

45.503

100

0.457
  ssb Neisseria meningitidis MC58

44.444

100

0.447