Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O1Q77_RS02295 Genome accession   NZ_CP114182
Coordinates   480217..480804 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain AS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 475217..485804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q77_RS02270 (O1Q77_02270) cspA 476537..476749 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  O1Q77_RS02275 (O1Q77_02275) yjbD 477344..477628 (-) 285 WP_279490155.1 DUF3811 domain-containing protein -
  O1Q77_RS02280 (O1Q77_02280) - 477775..478677 (-) 903 WP_279490156.1 cation diffusion facilitator family transporter -
  O1Q77_RS02285 (O1Q77_02285) - 479139..479264 (+) 126 WP_019445191.1 hypothetical protein -
  O1Q77_RS02290 (O1Q77_02290) - 479337..480080 (-) 744 WP_279490920.1 ABC transporter substrate-binding protein -
  O1Q77_RS02295 (O1Q77_02295) ssb 480217..480804 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  O1Q77_RS02300 (O1Q77_02300) - 481231..481878 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  O1Q77_RS02305 (O1Q77_02305) - 481935..482321 (+) 387 WP_013723429.1 curli production assembly/transport protein CsgE -
  O1Q77_RS02310 (O1Q77_02310) - 482333..482734 (+) 402 WP_236367705.1 curli assembly protein CsgF -
  O1Q77_RS02315 (O1Q77_02315) - 482742..483581 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  O1Q77_RS02320 (O1Q77_02320) - 483769..484290 (+) 522 WP_270905356.1 curlin -
  O1Q77_RS02325 (O1Q77_02325) - 484325..485776 (+) 1452 WP_279490159.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=764834 O1Q77_RS02295 WP_005340181.1 480217..480804(-) (ssb) [Aeromonas veronii strain AS1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=764834 O1Q77_RS02295 WP_005340181.1 480217..480804(-) (ssb) [Aeromonas veronii strain AS1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456