NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	O1Q77_RS01930	Genome accession	NZ_CP114182
Coordinates	397490..398362 (-)	Length	290 a.a.
NCBI ID	WP_304520466.1	Uniprot ID	-
Organism	Aeromonas veronii strain AS1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 392490..403362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O1Q77_RS01905 (O1Q77_01905)	secA	392621..395341 (+)	2721	WP_005336144.1	preprotein translocase subunit SecA	-
O1Q77_RS01910 (O1Q77_01910)	mutT	395416..395820 (+)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
O1Q77_RS01915 (O1Q77_01915)	yacG	395898..396092 (-)	195	WP_069527075.1	DNA gyrase inhibitor YacG	-
O1Q77_RS01920 (O1Q77_01920)	zapD	396102..396824 (-)	723	WP_005336141.1	cell division protein ZapD	-
O1Q77_RS01925 (O1Q77_01925)	coaE	396868..397476 (-)	609	WP_304520465.1	dephospho-CoA kinase	-
O1Q77_RS01930 (O1Q77_01930)	pilD	397490..398362 (-)	873	WP_304520466.1	A24 family peptidase	Machinery gene
O1Q77_RS01935 (O1Q77_01935)	pilC	398424..399665 (-)	1242	WP_005355091.1	type II secretion system F family protein	Machinery gene
O1Q77_RS01940 (O1Q77_01940)	pilB	399905..401611 (-)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
O1Q77_RS01945 (O1Q77_01945)	-	401616..402017 (-)	402	WP_120416063.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
O1Q77_RS01950 (O1Q77_01950)	nadC	402333..403196 (-)	864	WP_279464204.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32192.47 Da Isoelectric Point: 6.8283

                                >NTDB_id=764831 O1Q77_RS01930 WP_304520466.1 397490..398362(-) (pilD) [Aeromonas veronii strain AS1]

MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEANAPERYNLMVPRSACPHCGHA

ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLASGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL

IGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=764831 O1Q77_RS01930 WP_304520466.1 397490..398362(-) (pilD) [Aeromonas veronii strain AS1]

ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCTCTGATGATCGG

CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT

CCCCCGATGAGGAGGCCAATGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGTCCTCACTGTGGCCACGCC

ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC

GGCCCGCTATCCGCTGGTAGAGCTACTGACCGCCCTGCTCTCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGCA

CACTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG

CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTACCGCTGGCAGATGCCGTGATCGG

TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACCGGCAAAGAAGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCTCTGCCCATAATTCTGCTGCTCTCATCCCTG

ATCGGCGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT

CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	59.93	98.966	0.593
pilD	Vibrio campbellii strain DS40M4	55.903	99.31	0.555
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462

Detailed information NTG0764831