Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O0R49_RS20200 Genome accession   NZ_CP114177
Coordinates   3874716..3875258 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain PLA 1006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3869716..3880258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS20175 (O0R49_20180) - 3869988..3870596 (-) 609 WP_034622294.1 alpha/beta hydrolase -
  O0R49_RS20180 (O0R49_20185) - 3870593..3871543 (-) 951 WP_269195848.1 ring-cleaving dioxygenase -
  O0R49_RS20185 (O0R49_20190) opuFB 3871755..3873272 (-) 1518 WP_269195849.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  O0R49_RS20190 (O0R49_20195) - 3873265..3874233 (-) 969 WP_269195850.1 ABC transporter ATP-binding protein -
  O0R49_RS20195 (O0R49_20200) rpsR 3874436..3874675 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  O0R49_RS20200 (O0R49_20205) ssbA 3874716..3875258 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  O0R49_RS20205 (O0R49_20210) rpsF 3875295..3875582 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  O0R49_RS20210 (O0R49_20215) ychF 3875691..3876791 (-) 1101 WP_144471551.1 redox-regulated ATPase YchF -
  O0R49_RS20215 (O0R49_20220) - 3877008..3877214 (-) 207 WP_095410039.1 DUF951 domain-containing protein -
  O0R49_RS20220 (O0R49_20225) - 3877509..3878828 (+) 1320 WP_269195851.1 hydrolase -
  O0R49_RS20225 (O0R49_20230) - 3878844..3879254 (+) 411 WP_034283636.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=764741 O0R49_RS20200 WP_007497456.1 3874716..3875258(-) (ssbA) [Bacillus safensis strain PLA 1006]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=764741 O0R49_RS20200 WP_007497456.1 3874716..3875258(-) (ssbA) [Bacillus safensis strain PLA 1006]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ACCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361