NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	O0R49_RS17585	Genome accession	NZ_CP114177
Coordinates	3341200..3341886 (-)	Length	228 a.a.
NCBI ID	WP_263639812.1	Uniprot ID	-
Organism	Bacillus safensis strain PLA 1006
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3336200..3346886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O0R49_RS17550 (O0R49_17550)	fliW	3336338..3336772 (-)	435	WP_075611996.1	flagellar assembly protein FliW	-
O0R49_RS17555 (O0R49_17555)	-	3336801..3337379 (-)	579	WP_095409672.1	DUF6470 family protein	-
O0R49_RS17560 (O0R49_17560)	flgL	3337426..3338334 (-)	909	WP_269195674.1	flagellar hook-associated protein FlgL	-
O0R49_RS17565 (O0R49_17565)	flgK	3338344..3339864 (-)	1521	WP_144483665.1	flagellar hook-associated protein FlgK	-
O0R49_RS17570 (O0R49_17570)	-	3339880..3340362 (-)	483	WP_144472023.1	flagellar protein FlgN	-
O0R49_RS17575 (O0R49_17575)	flgM	3340381..3340644 (-)	264	WP_095409676.1	flagellar biosynthesis anti-sigma factor FlgM	-
O0R49_RS17580 (O0R49_17580)	-	3340724..3341143 (-)	420	WP_039181808.1	TIGR03826 family flagellar region protein	-
O0R49_RS17585 (O0R49_17585)	comFC	3341200..3341886 (-)	687	WP_263639812.1	ComF family protein	Machinery gene
O0R49_RS17590 (O0R49_17590)	-	3341883..3342176 (-)	294	WP_269195675.1	late competence development ComFB family protein	-
O0R49_RS17595 (O0R49_17595)	comFA	3342226..3343623 (-)	1398	WP_269195676.1	DEAD/DEAH box helicase	Machinery gene
O0R49_RS17600 (O0R49_17600)	-	3343744..3344586 (-)	843	WP_269195677.1	DegV family protein	-
O0R49_RS17605 (O0R49_17605)	degU	3344805..3345494 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
O0R49_RS17610 (O0R49_17610)	degS	3345559..3346734 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 26087.65 Da Isoelectric Point: 9.9366

                                >NTDB_id=764733 O0R49_RS17585 WP_263639812.1 3341200..3341886(-) (comFC) [Bacillus safensis strain PLA 1006]

MICPICDGHFVPAFTWKSLLLLNDERLCVACKNQLVKIERPICPTCGRAQSNDQMCQDCDRWNERIDSTKVLIKNRSVYI

YNELMKDVLARFKFRGDTALVELFKRDVQAAFKRSFCIKDPLLIPIPLSNERLKERGFNQSVIIASLIGKPILQPLVKIH

QSKQSKKKKNERLDQKGLFQIKQTNVIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide

Download Length: 687 bp

                                >NTDB_id=764733 O0R49_RS17585 WP_263639812.1 3341200..3341886(-) (comFC) [Bacillus safensis strain PLA 1006]

TTGATTTGCCCGATTTGCGATGGACATTTTGTGCCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGAGCGTCT

TTGTGTAGCATGTAAGAATCAATTAGTAAAGATTGAGCGTCCTATTTGTCCAACCTGCGGAAGAGCGCAGTCAAATGATC

AAATGTGCCAAGACTGTGATAGATGGAATGAACGCATTGATTCTACTAAAGTCCTTATAAAAAATAGGTCAGTTTATATC

TACAACGAGTTGATGAAAGATGTCCTTGCCCGCTTTAAATTTCGGGGTGATACGGCTTTAGTTGAGCTGTTTAAACGAGA

TGTACAAGCAGCATTTAAACGTTCCTTCTGCATAAAAGACCCATTGCTGATCCCGATCCCTTTAAGTAATGAAAGACTAA

AAGAAAGAGGGTTTAATCAGTCCGTTATCATCGCTTCCTTGATAGGTAAGCCGATATTGCAGCCACTCGTGAAAATACAT

CAAAGTAAGCAGTCCAAAAAAAAGAAAAATGAACGCCTAGATCAAAAAGGTTTGTTTCAAATAAAGCAAACAAATGTGAT

TGTTCAAAGAGATATTATATTAGTGGATGATATCTATACAACGGGAGCAACCATTTATGATGCGGCAAGAATTTTGAAAG

ACGCAGGTGCCAAAAGTGTTTCTTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(142-226)

Double zinc ribbon domain (DZR_2)

(3-59)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	48.696	100	0.491
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.364
comFC/cflB	Streptococcus mitis SK321	36.245	100	0.364

Detailed information NTG0764733