Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   O0R49_RS17595 Genome accession   NZ_CP114177
Coordinates   3342226..3343623 (-) Length   465 a.a.
NCBI ID   WP_269195676.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3337226..3348623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS17560 (O0R49_17560) flgL 3337426..3338334 (-) 909 WP_269195674.1 flagellar hook-associated protein FlgL -
  O0R49_RS17565 (O0R49_17565) flgK 3338344..3339864 (-) 1521 WP_144483665.1 flagellar hook-associated protein FlgK -
  O0R49_RS17570 (O0R49_17570) - 3339880..3340362 (-) 483 WP_144472023.1 flagellar protein FlgN -
  O0R49_RS17575 (O0R49_17575) flgM 3340381..3340644 (-) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  O0R49_RS17580 (O0R49_17580) - 3340724..3341143 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  O0R49_RS17585 (O0R49_17585) comFC 3341200..3341886 (-) 687 WP_263639812.1 ComF family protein Machinery gene
  O0R49_RS17590 (O0R49_17590) - 3341883..3342176 (-) 294 WP_269195675.1 late competence development ComFB family protein -
  O0R49_RS17595 (O0R49_17595) comFA 3342226..3343623 (-) 1398 WP_269195676.1 DEAD/DEAH box helicase Machinery gene
  O0R49_RS17600 (O0R49_17600) - 3343744..3344586 (-) 843 WP_269195677.1 DegV family protein -
  O0R49_RS17605 (O0R49_17605) degU 3344805..3345494 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  O0R49_RS17610 (O0R49_17610) degS 3345559..3346734 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  O0R49_RS17615 (O0R49_17615) - 3346954..3347622 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53264.14 Da        Isoelectric Point: 10.0383

>NTDB_id=764734 O0R49_RS17595 WP_269195676.1 3342226..3343623(-) (comFA) [Bacillus safensis strain PLA 1006]
MNMDKAMELKRQLYSRHLLTVETRCSQSNLDWLEEKGLVNRTTAIERKADGFTCYRCGVSHKRYFAHSPCEECQKDCMYC
RSCIMMGKATECGFLYEWTGPKMVETYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGIRIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHQQPLPVPTFQWIGHWKKKLKKKQLPSKVMNWMQ
RHIANKRRVLLFVPSIAVMKKATKILREHSLNVEGVSADDPVRKQKVQHFRDYAYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKNHIVKMNDTAAKEFTEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=764734 O0R49_RS17595 WP_269195676.1 3342226..3343623(-) (comFA) [Bacillus safensis strain PLA 1006]
TTGAACATGGACAAAGCAATGGAACTAAAGCGGCAGCTGTATTCACGCCATCTGCTCACTGTTGAAACAAGGTGCTCACA
GTCCAATTTAGATTGGCTGGAGGAGAAAGGCTTAGTTAATCGAACAACTGCCATTGAGAGGAAAGCAGATGGTTTTACAT
GCTACCGGTGTGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGAGTGTCAAAAGGATTGTATGTACTGT
AGATCATGCATCATGATGGGAAAAGCAACTGAATGTGGATTTCTTTATGAATGGACGGGTCCAAAAATGGTAGAAACATA
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCATCAGAAAGAATGATCGAAGCTATTAAAA
ACAAATTTGATCTACTCGTCTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCATGGAATTGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGATAAGAATAGCCGTTCTTTATGGAGGCAGTTCACAAAGGTTTCAAATAGCGCCGCTTGTGATCGCCACAACCC
ACCAGCTGATGAGATACAAAAATGCATTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATATATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCATCAGCAACCATTACCCGTCC
CGACCTTTCAATGGATCGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTTCCTTCTAAAGTGATGAATTGGATGCAG
AGACATATTGCCAATAAGAGAAGAGTATTACTTTTTGTTCCTTCTATTGCTGTCATGAAGAAGGCAACGAAGATTCTTCG
AGAACACTCCTTAAACGTAGAGGGAGTATCTGCCGATGATCCAGTTAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
CATACGATGTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACCATACCAAATGTTCAAGTAGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTGGGCAGACATCCCGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAATCATATCGTAAAAATGAATGATACGGCTG
CAAAAGAGTTTACTGAAAAACAGTGTGGCTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512