Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZ429_RS13040 Genome accession   NZ_CP114134
Coordinates   2767905..2768420 (-) Length   171 a.a.
NCBI ID   WP_269122239.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain YLX21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2762905..2773420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ429_RS13020 (OZ429_13020) - 2763102..2763710 (-) 609 WP_269122233.1 nucleotidyltransferase family protein -
  OZ429_RS13025 (OZ429_13025) - 2764297..2765346 (-) 1050 WP_269122235.1 XdhC family protein -
  OZ429_RS13030 (OZ429_13030) - 2765343..2765714 (-) 372 WP_330873182.1 hypothetical protein -
  OZ429_RS19635 - 2765745..2765969 (-) 225 Protein_2456 NAD(P)-dependent alcohol dehydrogenase -
  OZ429_RS13035 (OZ429_13035) - 2766265..2767749 (+) 1485 WP_269122237.1 sensor domain-containing diguanylate cyclase -
  OZ429_RS13040 (OZ429_13040) ssb 2767905..2768420 (-) 516 WP_269122239.1 single-stranded DNA-binding protein Machinery gene
  OZ429_RS13045 (OZ429_13045) - 2768695..2769693 (+) 999 WP_269122240.1 polyprenyl synthetase family protein -
  OZ429_RS13050 (OZ429_13050) - 2769883..2770683 (-) 801 WP_269122241.1 dienelactone hydrolase family protein -
  OZ429_RS13055 (OZ429_13055) murD 2770849..2772258 (-) 1410 WP_269122243.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18618.51 Da        Isoelectric Point: 5.3177

>NTDB_id=764500 OZ429_RS13040 WP_269122239.1 2767905..2768420(-) (ssb) [Xanthomonas fragariae strain YLX21]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATSSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGMGGDRPQRSQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=764500 OZ429_RS13040 WP_269122239.1 2767905..2768420(-) (ssb) [Xanthomonas fragariae strain YLX21]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTCAGTCTGGCCACCAGCAGCATGCGCAAAGACCGCGAGGGCAACAACCAAGAGCGCACCGAGTGGC
ACCGCGTGGTCTTCTTCGGAAAGCTGGGCGAGATCGCCGGTGAGTACCTACGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGATGGTGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGTCGTGGTGAAGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCTCGCAGGCCCCGCGCCAGCAGCAGGGCG
GCGGTGGCGGCGGTCAGGGTGGCGGTCAGGATTACGCCCCGCGTCGTCAGCAGCCGGCCCAGCAGCAATCGGCACCGCCG
ATGGACGATTTTGCCGACGATGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.486

100

0.497
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.491
  ssb Neisseria meningitidis MC58

44.886

100

0.462
  ssb Neisseria gonorrhoeae MS11

44.886

100

0.462