Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZ428_RS29835 Genome accession   NZ_CP114115
Coordinates   6313835..6314350 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas sp. GXZC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6308835..6319350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ428_RS29810 (OZ428_29810) - 6309470..6310429 (-) 960 WP_269132138.1 GlxA family transcriptional regulator -
  OZ428_RS29815 (OZ428_29815) - 6310526..6311086 (+) 561 WP_033897983.1 cysteine hydrolase family protein -
  OZ428_RS29820 (OZ428_29820) tam 6311108..6311869 (-) 762 WP_269132139.1 trans-aconitate 2-methyltransferase -
  OZ428_RS29825 (OZ428_29825) - 6311971..6312879 (+) 909 WP_269132140.1 LysR family transcriptional regulator -
  OZ428_RS29830 (OZ428_29830) - 6312899..6313723 (-) 825 WP_269132141.1 hypothetical protein -
  OZ428_RS29835 (OZ428_29835) ssb 6313835..6314350 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  OZ428_RS29840 (OZ428_29840) - 6314360..6315754 (-) 1395 WP_269132143.1 MFS transporter -
  OZ428_RS29845 (OZ428_29845) uvrA 6315933..6318767 (+) 2835 WP_033900046.1 excinuclease ABC subunit UvrA -
  OZ428_RS29850 (OZ428_29850) bfr 6318834..6319298 (-) 465 WP_033900044.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=764441 OZ428_RS29835 WP_017849542.1 6313835..6314350(-) (ssb) [Pseudomonas sp. GXZC]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=764441 OZ428_RS29835 WP_017849542.1 6313835..6314350(-) (ssb) [Pseudomonas sp. GXZC]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACTGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCTGAGATTGCTGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGATATGCAAGGCAC
CATGCAACTGCTGGGCGGTCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAACAGGCTGCTCCGCAACCGGCTGCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48