Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7R82_RS22560 Genome accession   NZ_AP022055
Coordinates   4911790..4912335 (-) Length   181 a.a.
NCBI ID   WP_043210277.1    Uniprot ID   A0AAX0VQA0
Organism   Pseudomonas putida strain WP4-W18-CRE-03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4906790..4917335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R82_RS22550 (WP4W18C03_44330) - 4909279..4910049 (-) 771 WP_043210271.1 SDR family NAD(P)-dependent oxidoreductase -
  H7R82_RS22555 (WP4W18C03_44340) - 4910323..4911705 (+) 1383 WP_090346910.1 PLP-dependent aminotransferase family protein -
  H7R82_RS22560 (WP4W18C03_44350) ssb 4911790..4912335 (-) 546 WP_043210277.1 single-stranded DNA-binding protein Machinery gene
  H7R82_RS22565 (WP4W18C03_44360) - 4912345..4913739 (-) 1395 WP_043210280.1 MFS transporter -
  H7R82_RS22570 (WP4W18C03_44370) uvrA 4913869..4916703 (+) 2835 WP_043210283.1 excinuclease ABC subunit UvrA -
  H7R82_RS22575 (WP4W18C03_44380) bfr 4916776..4917240 (-) 465 WP_028690240.1 bacterioferritin -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20132.27 Da        Isoelectric Point: 5.9312

>NTDB_id=76437 H7R82_RS22560 WP_043210277.1 4911790..4912335(-) (ssb) [Pseudomonas putida strain WP4-W18-CRE-03]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVAMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQGGDPYNQGGGNYNQGGGQQQYNQAPRQQAPRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=76437 H7R82_RS22560 WP_043210277.1 4911790..4912335(-) (ssb) [Pseudomonas putida strain WP4-W18-CRE-03]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACTTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCCGGCCAGAAAGTCGAGCGCACCGAGT
GGCACCGTGTTGCCATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAAGGTTCCCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGCAGAACCAGCAACAGGGCGGCGACCCGTACAACCAAGGTGGTGGCAACTACAACC
AAGGTGGTGGCCAGCAGCAGTACAACCAGGCGCCACGCCAGCAGGCTCCGCGTCCACAGCAGGCTCCACAGCGTCCTGCG
CCACAGCAGCCAGCTCCGCAACCGGCCGCTGACTTCGACAGCTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.284

100

0.569
  ssb Glaesserella parasuis strain SC1401

50

100

0.525
  ssb Neisseria meningitidis MC58

50

100

0.508
  ssb Neisseria gonorrhoeae MS11

50.549

100

0.508

Multiple sequence alignment